RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA690124", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA690124 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12149048 12149048 PRJNA690124_P_NODE_55990_length_242_cov_0.923077_g55624_i0 PRJNA690124 55990 242 0.923077 2.23384634 Armatimonadota bacterium 2033014 Bacteria Bacteria 142 4.59e-37   NR MCC2668029.1 2033014 g55624 i0 82.5 1.98347107438017 80 14 99.2 0 1 240 920 999 MCC2668029.1 transcription-repair coupling factor [Armatimonadota bacterium] diamond 480 142 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27682949 27682949 PRJNA690124_P_NODE_51544_length_246_cov_0.901734_g51178_i0 PRJNA690124 51544 246 0.901734 2.21826564 Armatimonadota bacterium 2033014 Bacteria Bacteria 145 1.04e-40   NR MBI3976353.1 2033014 g51178 i0 91.4 0.98780487804878 81 7 98.8 0 245 3 70 150 MBI3976353.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein [Armatimonadota bacterium] diamond 243 145 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29608245 29608245 PRJNA690124_P_NODE_45310_length_251_cov_0.876404_g44944_i0 PRJNA690124 45310 251 0.876404 2.19977404 Armatimonadota bacterium 2033014 Bacteria Bacteria 96.7 1.3800000000000001e-22   NR MCC2667943.1 2033014 g44944 i0 48.2 0.99203187250996006 83 43 99.2 0 3 251 29 111 MCC2667943.1 EpsI family protein [Armatimonadota bacterium] diamond 249 96.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30745893 30745893 PRJNA690124_P_NODE_46714_length_250_cov_0.881356_g46348_i0 PRJNA690124 46714 250 0.881356 2.20339 Armatimonadota bacterium 2033014 Bacteria Bacteria 60.1 2.8e-8   NR MBI2246993.1 2033014 g46348 i0 70 0.48 40 12 48 0 128 247 1 40 MBI2246993.1 cation transporter [Armatimonadota bacterium] diamond 120 60.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;