RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA690124", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA690124 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24895689 24895689 PRJNA690124_P_NODE_43300_length_253_cov_0.866667_g42934_i0 PRJNA690124 43300 253 0.866667 2.19266751 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 111 1.6e-27   NR RQM26635.1 112090 g42934 i0 65.9 7.73122529644269 82 28 97.2 0 252 7 213 294 RQM26635.1 hypothetical protein B5M09_003301 [Aphanomyces astaci] diamond 1956 111 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32548762 32548762 PRJNA690124_P_NODE_44579_length_252_cov_0.871508_g44213_i0 PRJNA690124 44579 252 0.871508 2.19620016 Phytophthora nicotianae P1976 1317066 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0144   NR ETO66010.1 1317066 g44213 i0 42.4 0.702380952380952 59 34 70.2 0 25 201 1 59 ETO66010.1 hypothetical protein F444_16750 [Phytophthora nicotianae P1976] diamond 177 42.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;