RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA690124", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA690124 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3219950 3219950 PRJNA690124_P_NODE_25163_length_327_cov_1.692913_g24797_i0 PRJNA690124 25163 327 1.692913 5.53582551 Candidatus Piscichlamydia sp. 1977145 Bacteria Bacteria 516 9.07e-142   NTclustered gi|1175896721|gb|KY380088.1| 1977145 g24797 i0 95.137 88.8012232415902 329 12 100 3 1 327 680 354 Candidatus Piscichlamydia sp. strain EP 16S ribosomal RNA gene, partial sequence blastn 29038 516 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Piscichlamydiaceae Candidatus Piscichlamydia Candidatus Piscichlamydia sp.
3220423 3220423 PRJNA690124_P_NODE_46483_length_250_cov_0.881356_g46117_i0 PRJNA690124 46483 250 0.881356 2.20339 Candidatus Piscichlamydia cyprini 1233676 Bacteria Bacteria 355 1.54e-93   NTclustered gi|406857609|gb|JX470313.1| 1233676 g46117 i0 92.43 100.044 251 16 100 3 1 250 17 265 Candidatus Piscichlamydia cyprinis isolate E4 16S ribosomal RNA gene, partial sequence blastn 25011 355 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Piscichlamydiaceae Candidatus Piscichlamydia Candidatus Piscichlamydia cyprini
26702330 26702330 PRJNA690124_P_NODE_43641_length_253_cov_0.866667_g43275_i0 PRJNA690124 43641 253 0.866667 2.19266751 Chlamydiales bacterium 2047757 Bacteria Bacteria 116 2.4e-29   NR MBN9378712.1 2047757 g43275 i0 65.5 1.99209486166008 84 29 99.6 0 252 1 27 110 MBN9378712.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Chlamydiales bacterium] diamond 504 116 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32831978 32831978 PRJNA690124_P_NODE_52900_length_245_cov_0.889535_g52534_i0 PRJNA690124 52900 245 0.889535 2.17936075 Chlamydiales bacterium 2047757 Bacteria Bacteria 63.9 7.42e-10   NR HSX13395.1 2047757 g52534 i0 49.2 0.722448979591837 59 30 72.2 0 187 11 1 59 HSX13395.1 GNAT family N-acetyltransferase [Chlamydiales bacterium] diamond 177 63.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;