RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA690124", tax_clade = "Nitrospinota/Tectimicrobiota group" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_kingdom 1

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 4 ✖

bioproject 1

  • PRJNA690124 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1945397 1945397 PRJNA690124_P_NODE_37722_length_271_cov_1.181818_g37356_i0 PRJNA690124 37722 271 1.181818 3.20272678 Nitrospina watsonii 1323948 Bacteria Bacteria 147 1.11e-30   NTclustered gi|2427816174|emb|OX336137.1| 1323948 g37356 i0 82.558 10.9741697416974 172 25 63 5 81 250 54311 54479 Nitrospina watsonii strain 347 genome assembly, chromosome: NSPWAT blastn 2974 147 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina watsonii
15972261 15972261 PRJNA690124_P_NODE_46493_length_250_cov_0.881356_g46127_i0 PRJNA690124 46493 250 0.881356 2.20339 Nitrospinota bacterium 2026769 Bacteria Bacteria 171 2.59e-48   NR MBI5178934.1 2026769 g46127 i0 97.6 0.984 82 2 98.4 0 3 248 114 195 MBI5178934.1 succinate dehydrogenase flavoprotein subunit [Nitrospinota bacterium] diamond 246 171 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
29671418 29671418 PRJNA690124_P_NODE_46770_length_250_cov_0.881356_g46404_i0 PRJNA690124 46770 250 0.881356 2.20339 Candidatus Tectimicrobiota bacterium 2528274 Bacteria Bacteria 136 1.12e-37   NR HSF34365.1 2528274 g46404 i0 83.1 1.98 83 14 99.6 0 249 1 182 264 HSF34365.1 enoyl-CoA hydratase-related protein [Candidatus Tectimicrobiota bacterium] diamond 495 136 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Candidatus Tectimicrobiota         Candidatus Tectimicrobiota bacterium
32105496 32105496 PRJNA690124_P_NODE_53858_length_244_cov_0.912281_g53492_i0 PRJNA690124 53858 244 0.912281 2.22596564 Nitrospinota bacterium 2026769 Bacteria Bacteria 99.4 1.9300000000000001e-22   NR MBI5428679.1 2026769 g53492 i0 72.3 0.799180327868853 65 18 79.9 0 243 49 335 399 MBI5428679.1 DUF3095 domain-containing protein [Nitrospinota bacterium] diamond 195 99.4 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;