RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690124", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA690124 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5773055 5773055 PRJNA690124_P_NODE_43185_length_253_cov_0.866667_g42819_i0 PRJNA690124 43185 253 0.866667 2.19266751 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 124 4.8e-24   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g42819 i0 79.661 0.699604743083004 177 32 69 4 1 175 2033646 2033820 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 177 124 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
10107477 10107477 PRJNA690124_P_NODE_8408_length_552_cov_2.574113_g8043_i0 PRJNA690124 8408 552 2.574113 14.20910376 Rhodothermales 1853224 Bacteria Bacteria 586 1.1999999999999996e-162   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g8043 i0 85.816 164.748188405797 564 67 100 12 1 552 2906815 2906253 Rhodothermaceae bacterium RA chromosome, complete genome blastn 90941 586 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
28787508 28787508 PRJNA690124_P_NODE_52227_length_245_cov_0.906977_g51861_i0 PRJNA690124 52227 245 0.906977 2.22209365 Rhodothermales bacterium 2306054 Bacteria Bacteria 91.3 8.65e-20   NR MFQ5568151.1 2306054 g51861 i0 51.3 1.95918367346939 80 39 98 0 4 243 112 191 MFQ5568151.1 universal stress protein [Rhodothermales bacterium] diamond 480 91.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;