RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690124", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA690124 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
669502 669502 PRJNA690124_P_NODE_43781_length_253_cov_0.866667_g43415_i0 PRJNA690124 43781 253 0.866667 2.19266751 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 113 6.49e-27   NR MEY2665689.1 2762014 g43415 i0 84.1 1.63636363636364 69 11 81.8 0 3 209 599 667 MEY2665689.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 414 113 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
28913749 28913749 PRJNA690124_P_NODE_51728_length_246_cov_0.884393_g51362_i0 PRJNA690124 51728 246 0.884393 2.17560678 Parcubacteria bacterium OLB19 1617425 Bacteria Bacteria 100 9.28e-23   NR KXJ98459.1 1617425 g51362 i0 70 0.853658536585366 70 21 85.4 0 210 1 1 70 KXJ98459.1 MAG: Signal peptidase I W [Parcubacteria bacterium OLB19] diamond 210 100 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium OLB19
30019371 30019371 PRJNA690124_P_NODE_54511_length_243_cov_0.917647_g54145_i0 PRJNA690124 54511 243 0.917647 2.22988221 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 58.9 4.64e-8   NR HHE76630.1 2762014 g54145 i0 88.2 0.419753086419753 34 4 42 0 141 242 3 36 HHE76630.1 glycosyltransferase family 2 protein [Candidatus Parcubacteria bacterium] diamond 102 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;