RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690124", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA690124 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1945047 1945047 PRJNA690124_P_NODE_21002_length_355_cov_1.156028_g20636_i0 PRJNA690124 21002 355 1.156028 4.1038994 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 651 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g20636 i0 99.718 15.9915492957746 355 1 100 0 1 355 1286 1640 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5677 651 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17247401 17247401 PRJNA690124_P_NODE_44554_length_252_cov_0.871508_g44188_i0 PRJNA690124 44554 252 0.871508 2.19620016 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 388 1.5299999999999998e-103   NTclustered gi|292559443|ref|NC_013986.1| 5778 g44188 i0 94.488 48.7976190476191 254 11 100 3 1 252 26183 25931 Hartmannella vermiformis mitochondrion, complete genome blastn 12297 388 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19030018 19030018 PRJNA690124_P_NODE_21835_length_348_cov_2.589091_g21469_i0 PRJNA690124 21835 348 2.589091 9.01003668 Vermamoeba 1260114 Tubulinea other_Eukaryota 632 9.25e-177   NTclustered gi|300078496|gb|GU001158.1| 5778 g21469 i0 99.425 41.3850574712644 348 2 100 0 1 348 2844 2497 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14402 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;