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contig_metadata

12 rows where bioproject = "PRJNA690124" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA690124 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1945047 1945047 PRJNA690124_P_NODE_21002_length_355_cov_1.156028_g20636_i0 PRJNA690124 21002 355 1.156028 4.1038994 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 651 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g20636 i0 99.718 15.9915492957746 355 1 100 0 1 355 1286 1640 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5677 651 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3220091 3220091 PRJNA690124_P_NODE_31603_length_294_cov_2.470588_g31237_i0 PRJNA690124 31603 294 2.470588 7.26352872 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 401 2.3499999999999994e-107   NTclustered gi|300078498|gb|GU001160.1| 5755 g31237 i0 91.234 1.04761904761905 308 8 100 17 1 294 5621 5923 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 308 401 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8322238 8322238 PRJNA690124_P_NODE_26527_length_319_cov_3.113821_g26161_i0 PRJNA690124 26527 319 3.113821 9.93308899 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 446 1.17e-120   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g26161 i0 92.476 47.6457680250784 319 13 100 10 1 319 452 145 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 15199 446 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
10873774 10873774 PRJNA690124_P_NODE_55269_length_242_cov_1.846154_g54903_i0 PRJNA690124 55269 242 1.846154 4.46769268 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 289 1.53e-73   NTclustered gi|300078498|gb|GU001160.1| 5755 g54903 i0 88.618 20.3636363636364 246 17 100 9 1 242 7070 6832 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4928 289 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12148468 12148468 PRJNA690124_P_NODE_28750_length_308_cov_1.523404_g28384_i0 PRJNA690124 28750 308 1.523404 4.69208432 Cochliopodium minus 313997 Discosea other_Eukaryota 529 1.0899999999999996e-145   NTclustered gi|330902862|gb|JF298257.1| 313997 g28384 i0 97.452 76.1655844155844 314 0 100 3 1 308 860 1171 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 23459 529 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
17246982 17246982 PRJNA690124_P_NODE_25634_length_324_cov_4.382470_g25268_i0 PRJNA690124 25634 324 4.38247 14.1992028 Vannella simplex 197532 Discosea other_Eukaryota 582 8.729999999999998e-162   NTclustered gi|284192609|gb|GQ265407.1| 197532 g25268 i0 99.074 97.5679012345679 324 3 100 0 1 324 798 475 Vannella simplex strain L4A Cl 4/1/2 clone A147.4 18S ribosomal RNA gene, partial sequence blastn 31612 582 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
17247401 17247401 PRJNA690124_P_NODE_44554_length_252_cov_0.871508_g44188_i0 PRJNA690124 44554 252 0.871508 2.19620016 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 388 1.5299999999999998e-103   NTclustered gi|292559443|ref|NC_013986.1| 5778 g44188 i0 94.488 48.7976190476191 254 11 100 3 1 252 26183 25931 Hartmannella vermiformis mitochondrion, complete genome blastn 12297 388 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19030018 19030018 PRJNA690124_P_NODE_21835_length_348_cov_2.589091_g21469_i0 PRJNA690124 21835 348 2.589091 9.01003668 Vermamoeba 1260114 Tubulinea other_Eukaryota 632 9.25e-177   NTclustered gi|300078496|gb|GU001158.1| 5778 g21469 i0 99.425 41.3850574712644 348 2 100 0 1 348 2844 2497 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14402 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21071639 21071639 PRJNA690124_P_NODE_30317_length_300_cov_3.722467_g29951_i0 PRJNA690124 30317 300 3.722467 11.167401 Cochliopodium minus 313997 Discosea other_Eukaryota 549 8.119999999999997e-152   NTclustered gi|330902862|gb|JF298257.1| 313997 g29951 i0 99.668 66.36 301 0 100 1 1 300 560 260 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 19908 549 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
21071986 21071986 PRJNA690124_P_NODE_46337_length_250_cov_1.254237_g45971_i0 PRJNA690124 46337 250 1.254237 3.1355925 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 241 4.5e-59   NTclustered gi|300078498|gb|GU001160.1| 5755 g45971 i0 95.946 1.82 148 6 59 0 1 148 6172 6319 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 455 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27840281 27840281 PRJNA690124_P_NODE_48984_length_248_cov_0.891429_g48618_i0 PRJNA690124 48984 248 0.891429 2.21074392 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 98.6 3.81e-24   NR PRP82916.1 1890364 g48618 i0 73.8 1.4758064516129 61 16 73.8 0 187 5 28 88 PRP82916.1 putative 60S ribosomal protein L22 [Planoprotostelium fungivorum] diamond 366 98.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30650842 30650842 PRJNA690124_P_NODE_55773_length_242_cov_0.923077_g55407_i0 PRJNA690124 55773 242 0.923077 2.23384634 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 109 2.17e-28   NR PRP75136.1 1890364 g55407 i0 61.3 0.991735537190083 80 30 99.2 1 2 241 2 80 PRP75136.1 ubiquitin-conjugating enzyme E2 [Planoprotostelium fungivorum] diamond 240 109 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;