RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA689790" and tax_phylum = "Nematomorpha"

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tax_superkingdom 1

tax_phylum 1

  • Nematomorpha · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9597255 9597255 PRJNA689790_S_NODE_14188_length_160_cov_2.406504_g14073_i0 PRJNA689790 14188 160 2.406504 3.8504064 Gordionus sp. m RMFG-2023 3053472 Nematomorpha other_Eukaryota 134 4.61e-27   NTclustered gi|2733941282|ref|XM_065468361.1| 3053472 g14073 i0 85.185 17.375 135 15 82 3 30 160 128 261 PREDICTED: Gordionus sp. m RMFG-2023 iron-sulfur cluster assembly scaffold protein IscU-like (LOC135931327), transcript variant X1, mRNA blastn 2780 134 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
10872757 10872757 PRJNA689790_S_NODE_10989_length_179_cov_1.936620_g10874_i0 PRJNA689790 10989 179 1.93662 3.4665498 Gordionus sp. m RMFG-2023 3053472 Nematomorpha other_Eukaryota 62.1 2.52e-5   NTclustered gi|2733948292|ref|XM_065458671.1| 3053472 g10874 i0 95 0.446927374301676 40 1 22 1 141 179 245 206 PREDICTED: Gordionus sp. m RMFG-2023 mRNA cap guanine-N7 methyltransferase-like (LOC135923749), transcript variant X1, mRNA blastn 80 62.1 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;