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contig_metadata

25 rows where bioproject = "PRJNA689790" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668756 668756 PRJNA689790_S_NODE_5081_length_267_cov_4.804348_g4966_i0 PRJNA689790 5081 267 4.804348 12.82760916 Meloidogyne enterolobii 390850 Nematoda Nematoda 100 5.62e-26   NR CAD2132787.1 390850 g4966 i0 82.1 0.629213483146067 56 10 62.9 0 236 69 1 56 CAD2132787.1 unnamed protein product [Meloidogyne enterolobii] diamond 168 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
668774 668774 PRJNA689790_S_NODE_801_length_749_cov_7.237360_g725_i0 PRJNA689790 801 749 7.23736 54.2078264 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 307 7.639999999999997e-99   NR CAD5231976.1 6326 g725 i0 70.7 7.41388518024032 208 61 83.3 0 742 119 281 488 CAD5231976.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 5553 310 0.990322580645161 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
3219560 3219560 PRJNA689790_S_NODE_12163_length_171_cov_1.559701_g12048_i0 PRJNA689790 12163 171 1.559701 2.66708871 Strongyloides papillosus 174720 Nematoda Nematoda 93.5 8.44e-15   NTclustered gi|687022643|emb|LM525557.1| 174720 g12048 i0 90.141 4.87719298245614 71 7 42 0 7 77 633166 633096 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 834 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7556075 7556075 PRJNA689790_S_NODE_726_length_801_cov_5.972513_g656_i0 PRJNA689790 726 801 5.972513 47.83982913 Metazoa 33208 Nematoda Nematoda 525 3.939999999999999e-144   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g656 i0 81.335 68.9550561797753 659 111 82 12 149 801 1542 890 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 55233 525 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8321867 8321867 PRJNA689790_S_NODE_2527_length_403_cov_2.489071_g2412_i0 PRJNA689790 2527 403 2.489071 10.03095613 Strongyloides ratti 34506 Nematoda Nematoda 263 1.64e-65   NTclustered gi|1376144539|ref|XM_024652732.1| 34506 g2412 i0 80.398 43.9875930521092 352 63 87 6 3 351 102 450 Strongyloides ratti 40S ribosomal protein S14 (SRAE_2000174400), partial mRNA blastn 17727 263 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8321872 8321872 PRJNA689790_S_NODE_3267_length_346_cov_2.006472_g3152_i0 PRJNA689790 3267 346 2.006472 6.94239312 Ascaris suum 6253 Nematoda Nematoda 76.6 1.52e-13   NR CAK18211.1 6253 g3152 i0 61.8 2.91329479768786 55 21 47.7 0 2 166 414 468 CAK18211.1 putative disulphide isomerase [Ascaris suum] diamond 1008 76.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris suum
17246644 17246644 PRJNA689790_S_NODE_5434_length_257_cov_4.054545_g5319_i0 PRJNA689790 5434 257 4.054545 10.42018065 Plectus acuminatus 70689 Nematoda Nematoda 259 1.28e-64   NTclustered gi|3860543|emb|AJ012665.1| 70689 g5319 i0 85.714 92.8832684824903 245 35 95 0 1 245 302 58 Plectus acuminatus mRNA for actin blastn 23871 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus acuminatus
21071190 21071190 PRJNA689790_S_NODE_7877_length_210_cov_3.167630_g7762_i0 PRJNA689790 7877 210 3.16763 6.652023 Strongyloides papillosus 174720 Nematoda Nematoda 150 6.35e-32   NTclustered gi|687022666|emb|LM525580.1| 174720 g7762 i0 81.026 8.2952380952381 195 32 91 5 9 200 237138 237330 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 1742 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26987314 26987314 PRJNA689790_S_NODE_9462_length_192_cov_2.767742_g9347_i0 PRJNA689790 9462 192 2.767742 5.31406464 Dirofilaria immitis 6287 Nematoda Nematoda 53.1 1.11e-6   NR MCP9259332.1 6287 g9347 i0 51.9 0.8125 52 25 81.3 0 27 182 100 151 MCP9259332.1 hypothetical protein [Dirofilaria immitis] diamond 156 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
27240285 27240285 PRJNA689790_S_NODE_13203_length_165_cov_1.640625_g13088_i0 PRJNA689790 13203 165 1.640625 2.70703125 Pristionchus pacificus 54126 Nematoda Nematoda 46.2 7.99e-4   NR KAF8355520.1 54126 g13088 i0 56.7 1.09090909090909 30 13 54.5 0 96 7 446 475 KAF8355520.1 gcy-11, partial [Pristionchus pacificus] diamond 180 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
27651115 27651115 PRJNA689790_S_NODE_14324_length_160_cov_1.113821_g14209_i0 PRJNA689790 14324 160 1.113821 1.7821136 Mesorhabditis spiculigera 96644 Nematoda Nematoda 54.7 3.99e-7   NR CAJ0585658.1 96644 g14209 i0 51 3.73125 51 25 95.6 0 3 155 125 175 CAJ0585658.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 597 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27694359 27694359 PRJNA689790_S_NODE_14804_length_158_cov_0.966942_g14689_i0 PRJNA689790 14804 158 0.966942 1.52776836 root 1 Root_unresolved Root_unresolved 82.8 8.85e-17   NR KAI6220296.1 269767 g14689 i0 69.2 9.87341772151899 52 16 98.7 0 158 3 476 527 KAI6220296.1 Ras family protein [Aphelenchoides besseyi] diamond 1560 82.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
28156386 28156386 PRJNA689790_S_NODE_15405_length_155_cov_1.983051_g15290_i0 PRJNA689790 15405 155 1.983051 3.07372905 Pristionchus fissidentatus 1538716 Nematoda Nematoda 42 0.0209   NR GMT11864.1 1538716 g15290 i0 44.7 3.63870967741935 47 23 91 1 10 150 220 263 GMT11864.1 hypothetical protein PFISCL1PPCAC_3162, partial [Pristionchus fissidentatus] diamond 564 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
28661476 28661476 PRJNA689790_S_NODE_7687_length_213_cov_1.767045_g7572_i0 PRJNA689790 7687 213 1.767045 3.76380585 Teladorsagia circumcincta 45464 Nematoda Nematoda 79 8.08e-17   NR PIO56293.1 45464 g7572 i0 56.6 1.50704225352113 53 23 74.6 0 213 55 33 85 PIO56293.1 hypothetical protein TELCIR_22308, partial [Teladorsagia circumcincta] diamond 321 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
29020455 29020455 PRJNA689790_S_NODE_11588_length_175_cov_1.369565_g11473_i0 PRJNA689790 11588 175 1.369565 2.39673875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.5 4.96e-7   NR XP_024504297.1 34506 g11473 i0 42.6 4.69714285714286 54 31 92.6 0 10 171 1330 1383 XP_024504297.1 CAD protein [Strongyloides ratti] diamond 822 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30050615 30050615 PRJNA689790_S_NODE_6791_length_228_cov_1.209424_g6676_i0 PRJNA689790 6791 228 1.209424 2.75748672 Strongylus vulgaris 40348 Nematoda Nematoda 49.3 1.19e-4   NR VDM81088.1 40348 g6676 i0 40.6 2.52631578947368 64 38 84.2 0 3 194 88 151 VDM81088.1 unnamed protein product [Strongylus vulgaris] diamond 576 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
30619374 30619374 PRJNA689790_S_NODE_6353_length_237_cov_1.945000_g6238_i0 PRJNA689790 6353 237 1.945 4.60965 Pristionchus fissidentatus 1538716 Nematoda Nematoda 50.8 4.78e-5   NR GMT28265.1 1538716 g6238 i0 41.5 0.822784810126582 65 31 73.4 2 188 15 459 523 GMT28265.1 hypothetical protein PFISCL1PPCAC_19562, partial [Pristionchus fissidentatus] diamond 195 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30682466 30682466 PRJNA689790_S_NODE_9573_length_191_cov_2.097403_g9458_i0 PRJNA689790 9573 191 2.097403 4.00603973 Strongylus vulgaris 40348 Nematoda Nematoda 64.7 5.02e-12   NR VDM78494.1 40348 g9458 i0 66.7 3.87958115183246 42 12 62.8 1 191 72 11 52 VDM78494.1 unnamed protein product, partial [Strongylus vulgaris] diamond 741 64.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
31282951 31282951 PRJNA689790_S_NODE_6955_length_225_cov_1.452128_g6840_i0 PRJNA689790 6955 225 1.452128 3.267288 Brugia pahangi 6280 Nematoda Nematoda 69.7 9.3e-12   NR VDN93748.1 6280 g6840 i0 49.3 0.973333333333333 73 35 94.7 1 213 1 355 427 VDN93748.1 unnamed protein product [Brugia pahangi] diamond 219 69.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
31389595 31389595 PRJNA689790_S_NODE_4676_length_280_cov_3.292181_g4561_i0 PRJNA689790 4676 280 3.292181 9.2181068 Rhabditida 6236 Nematoda Nematoda 122 2.01e-33   NR KHN76788.1 6265 g4561 i0 68.5 10.8321428571429 92 28 98.6 1 5 280 16 106 KHN76788.1 40S ribosomal protein S15 [Toxocara canis] diamond 3033 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31599514 31599514 PRJNA689790_S_NODE_7436_length_217_cov_1.083333_g7321_i0 PRJNA689790 7436 217 1.083333 2.35083261 Caenorhabditis remanei 31234 Nematoda Nematoda 42.4 0.0305   NR EFO94813.1 31234 g7321 i0 46.9 0.67741935483871 49 23 66.4 3 63 206 172 218 EFO94813.1 hypothetical protein CRE_08861 [Caenorhabditis remanei] diamond 147 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
32327378 32327378 PRJNA689790_S_NODE_10279_length_185_cov_1.702703_g10164_i0 PRJNA689790 10279 185 1.702703 3.15000055 Strongyloides ratti 34506 Nematoda Nematoda 69.3 5.85e-12   NR XP_024508222.1 34506 g10164 i0 86.1 4.39459459459459 36 5 58.4 0 185 78 304 339 XP_024508222.1 Phosphate carrier protein, mitochondrial [Strongyloides ratti] diamond 813 69.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32548742 32548742 PRJNA689790_S_NODE_4599_length_283_cov_2.052846_g4484_i0 PRJNA689790 4599 283 2.052846 5.80955418 Parelaphostrongylus tenuis 148309 Nematoda Nematoda 48.5 2.89e-4   NR KAJ1366225.1 148309 g4484 i0 34.5 0.614840989399293 58 38 61.5 0 2 175 124 181 KAJ1366225.1 hypothetical protein KIN20_026829 [Parelaphostrongylus tenuis] diamond 174 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Parelaphostrongylus Parelaphostrongylus tenuis
32622920 32622920 PRJNA689790_S_NODE_2060_length_455_cov_2.703349_g1948_i0 PRJNA689790 2060 455 2.703349 12.30023795 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 99 1.97e-21   NR VDN51155.1 318479 g1948 i0 40.3 5.95384615384615 149 84 98.2 2 5 451 159 302 VDN51155.1 unnamed protein product [Dracunculus medinensis] diamond 2709 99.4 0.995975855130785 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
32863406 32863406 PRJNA689790_S_NODE_15000_length_157_cov_1.291667_g14885_i0 PRJNA689790 15000 157 1.291667 2.02791719 Pristionchus pacificus 54126 Nematoda Nematoda 59.3 1.6e-8   NR KAF8366309.1 54126 g14885 i0 66.7 1.4522292993630601 39 13 74.5 0 1 117 327 365 KAF8366309.1 hypothetical protein PRIPAC_84138 [Pristionchus pacificus] diamond 228 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;