RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA689790" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA689790 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27208559 27208559 PRJNA689790_S_NODE_13082_length_166_cov_1.279070_g12967_i0 PRJNA689790 13082 166 1.27907 2.1232562 Giardia intestinalis 5741 Fornicata other_Eukaryota 62.4 1.01e-9   NR AAB58258.1 5741 g12967 i0 52.2 1.66265060240964 46 21 81.3 1 2 136 221 266 AAB58258.1 cysteine protease [Giardia intestinalis] diamond 276 62.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
29324337 29324337 PRJNA689790_S_NODE_8089_length_208_cov_1.368421_g7974_i0 PRJNA689790 8089 208 1.368421 2.84631568 Kipferlia bialata 797122 Fornicata other_Eukaryota 50.8 3.41e-5   NR GIQ80246.1 797122 g7974 i0 41.4 0.836538461538462 58 32 80.8 1 41 208 2203 2260 GIQ80246.1 protein of unknown function DUF3645 [Kipferlia bialata] diamond 174 50.8 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
31915637 31915637 PRJNA689790_S_NODE_4877_length_274_cov_1.489451_g4762_i0 PRJNA689790 4877 274 1.489451 4.08109574 Kipferlia bialata 797122 Fornicata other_Eukaryota 108 1.09e-25   NR GIQ82153.1 797122 g4762 i0 57.1 0.996350364963504 91 39 99.6 0 1 273 200 290 GIQ82153.1 hypothetical protein KIPB_003239 [Kipferlia bialata] diamond 273 108 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;