RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA689790" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA689790 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668737 668737 PRJNA689790_S_NODE_2641_length_391_cov_4.220339_g2526_i0 PRJNA689790 2641 391 4.220339 16.50152549 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 157 1.84e-46   NR SPQ93437.1 37360 g2526 i0 68.2 3.30690537084399 110 35 84.4 0 382 53 32 141 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 1293 158 0.993670886075949 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27113757 27113757 PRJNA689790_S_NODE_6522_length_233_cov_3.637755_g6407_i0 PRJNA689790 6522 233 3.637755 8.47596915 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 85.5 2.9e-17   NR SPQ97871.1 37360 g6407 i0 63.6 0.991416309012876 77 28 99.1 0 231 1 413 489 SPQ97871.1 unnamed protein product [Plasmodiophora brassicae] diamond 231 85.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27335347 27335347 PRJNA689790_S_NODE_12763_length_168_cov_1.129771_g12648_i0 PRJNA689790 12763 168 1.129771 1.89801528 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 77.8 1.12e-16   NR MES1919908.1 126728 g12648 i0 74.5 1.96428571428571 55 14 98.2 0 1 165 12 66 MES1919908.1 60S ribosomal protein L26A [Bonamia ostreae] diamond 330 77.8 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
27430244 27430244 PRJNA689790_S_NODE_6963_length_225_cov_1.074468_g6848_i0 PRJNA689790 6963 225 1.074468 2.417553 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.18e-5   NR CEO98908.1 37360 g6848 i0 41.4 0.933333333333333 70 40 93.3 1 213 4 89 157 CEO98908.1 hypothetical protein PBRA_007022 [Plasmodiophora brassicae] diamond 210 52.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28515057 28515057 PRJNA689790_S_NODE_5667_length_251_cov_6.247664_g5552_i0 PRJNA689790 5667 251 6.247664 15.68163664 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 95.5 5.08e-21   NR CEP01299.1 37360 g5552 i0 63.6 6.26294820717131 66 24 78.9 0 3 200 325 390 CEP01299.1 hypothetical protein PBRA_001905 [Plasmodiophora brassicae] diamond 1572 95.9 0.995828988529718 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30461938 30461938 PRJNA689790_S_NODE_7753_length_212_cov_2.005714_g7638_i0 PRJNA689790 7753 212 2.005714 4.25211368 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 129 2.04e-36   NR SPQ97467.1 37360 g7638 i0 81.4 0.990566037735849 70 12 99.1 1 210 1 12 80 SPQ97467.1 unnamed protein product [Plasmodiophora brassicae] diamond 210 129 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31409636 31409636 PRJNA689790_S_NODE_8576_length_202_cov_1.181818_g8461_i0 PRJNA689790 8576 202 1.181818 2.38727236 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 51.6 3.36e-6   NR MES1918433.1 126728 g8461 i0 54.1 1.78217821782178 37 17 55 0 91 201 46 82 MES1918433.1 hypothetical protein [Bonamia ostreae] diamond 360 51.6 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
31579343 31579343 PRJNA689790_S_NODE_9216_length_195_cov_1.481013_g9101_i0 PRJNA689790 9216 195 1.481013 2.88797535 root 1 Root_unresolved Root_unresolved 46.6 8.26e-4   NR CEP03432.1 37360 g9101 i0 52.2 2.92307692307692 46 20 70.8 1 179 42 86 129 CEP03432.1 hypothetical protein PBRA_003192 [Plasmodiophora brassicae] diamond 570 47 0.991489361702128 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32370319 32370319 PRJNA689790_S_NODE_6499_length_234_cov_1.979695_g6384_i0 PRJNA689790 6499 234 1.979695 4.6324863 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 104 4.04e-25   NR CEO95994.1 37360 g6384 i0 64.9 3.91025641025641 77 27 98.7 0 232 2 79 155 CEO95994.1 hypothetical protein PBRA_004684 [Plasmodiophora brassicae] diamond 915 104 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;