RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA689790" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23621618 23621618 PRJNA689790_S_NODE_4999_length_270_cov_2.841202_g4884_i0 PRJNA689790 4999 270 2.841202 7.6712454 Chlorobiaceae 191412 Bacteria Bacteria 177 1.73e-50   NR MBC8524301.1 1096 g4884 i0 82 6.92222222222222 89 16 98.9 0 269 3 451 539 MBC8524301.1 phosphoenolpyruvate carboxykinase (GTP) [Chlorobium phaeobacteroides] diamond 1869 177 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
28356981 28356981 PRJNA689790_S_NODE_12346_length_170_cov_1.503759_g12231_i0 PRJNA689790 12346 170 1.503759 2.5563903 root 1 Root_unresolved Root_unresolved 99.8 6.77e-23   NR WP_012499827.1 100716 g12231 i0 85.7 32.5588235294118 56 8 98.8 0 3 170 372 427 WP_012499827.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein [Chloroherpeton thalassium] diamond 5535 100 0.998 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;