RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA689790", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Bacteria · 9 ✖

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA689790 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668728 668728 PRJNA689790_S_NODE_2001_length_461_cov_2.915094_g1889_i0 PRJNA689790 2001 461 2.915094 13.43858334 Thermus brockianus 56956 Bacteria Bacteria 54.7 0.012   NTclustered gi|1102955210|gb|CP016312.1| 56956 g1889 i0 92.5 0.17353579175705 40 0 8 3 171 208 283113 283075 Thermus brockianus strain GE-1 chromosome, complete genome blastn 80 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus
7047369 7047369 PRJNA689790_S_NODE_8386_length_204_cov_1.622754_g8271_i0 PRJNA689790 8386 204 1.622754 3.31041816 Deinococcus aetherius 200252 Bacteria Bacteria 108 3.74e-19   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g8271 i0 92.105 7.60294117647059 76 6 37 0 64 139 2711438 2711363 Deinococcus aetherius ST0316 DNA, complete genome blastn 1551 108 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
12657526 12657526 PRJNA689790_S_NODE_10150_length_186_cov_1.771812_g10035_i0 PRJNA689790 10150 186 1.771812 3.29557032 Deinococcus 1298 Bacteria Bacteria 113 7.19e-21   NTclustered gi|730601855|gb|CP010028.1| 57497 g10035 i0 86.111 43.8494623655914 108 11 57 4 77 182 3163778 3163883 Deinococcus swuensis strain DY59, complete genome blastn 8156 113 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
26670559 26670559 PRJNA689790_S_NODE_6461_length_235_cov_1.575758_g6346_i0 PRJNA689790 6461 235 1.575758 3.7030313 Trueperaceae bacterium 2026798 Bacteria Bacteria 69.7 7.1e-12   NR MFO7543970.1 2026798 g6346 i0 61.7 2.2468085106383 60 21 75.3 2 225 49 84 142 MFO7543970.1 oxidoreductase [Trueperaceae bacterium] diamond 528 69.7 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
28156381 28156381 PRJNA689790_S_NODE_11325_length_177_cov_1.100000_g11210_i0 PRJNA689790 11325 177 1.1 1.947 Aminobacterium 81466 Bacteria Bacteria 41.6 0.0379   NR WP_286934164.1 81466 g11210 i0 42.6 1.55932203389831 47 27 79.7 0 146 6 12 58 WP_286934164.1 MULTISPECIES: formate/nitrite transporter family protein [Aminobacterium] diamond 276 41.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium  
28925331 28925331 PRJNA689790_S_NODE_10548_length_183_cov_1.068493_g10433_i0 PRJNA689790 10548 183 1.068493 1.95534219 PVC group 1783257 Bacteria Bacteria 60.8 6.71e-9   NR WP_318773950.1 1955249 g10433 i0 62.5 8.22950819672131 56 20 90.2 1 14 178 687 742 WP_318773950.1 Ig-like domain-containing protein, partial [Meiothermus sp.] diamond 1506 60.8 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.
29797934 29797934 PRJNA689790_S_NODE_8791_length_199_cov_1.925926_g8676_i0 PRJNA689790 8791 199 1.925926 3.83259274 Synergistales bacterium 2268201 Bacteria Bacteria 66.2 8.19e-11   NR MDD4364172.1 2268201 g8676 i0 51.5 1.98994974874372 66 32 99.5 0 2 199 58 123 MDD4364172.1 carbamate kinase [Synergistales bacterium] diamond 396 66.2 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
31093397 31093397 PRJNA689790_S_NODE_4975_length_271_cov_2.290598_g4860_i0 PRJNA689790 4975 271 2.290598 6.20752058 Deinococcus arenicola 2994950 Bacteria Bacteria 53.9 5.61e-6   NR WP_317639123.1 2994950 g4860 i0 49.2 2.97785977859779 59 27 65.3 1 270 94 262 317 WP_317639123.1 leishmanolysin-related zinc metalloendopeptidase [Deinococcus arenicola] diamond 807 53.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus arenicola
32022133 32022133 PRJNA689790_S_NODE_16778_length_150_cov_2.070796_g16663_i0 PRJNA689790 16778 150 2.070796 3.106194 Bacteria 2 Bacteria Bacteria 70.1 2.38e-12   NR WP_211317990.1 309889 g16663 i0 61.2 10.4 49 19 98 0 150 4 173 221 WP_211317990.1 putative Ig domain-containing protein, partial [Deinococcus yavapaiensis] diamond 1560 70.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yavapaiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;