RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA689790", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA689790 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28629995 28629995 PRJNA689790_S_NODE_12647_length_168_cov_2.083969_g12532_i0 PRJNA689790 12647 168 2.083969 3.50106792 Nitrospiria bacterium 2306052 Bacteria Bacteria 53.9 1.55e-6   NR HEY5649011.1 2306052 g12532 i0 51.8 1 56 26 98.2 1 1 165 318 373 HEY5649011.1 PQQ-dependent sugar dehydrogenase [Nitrospiria bacterium] diamond 168 53.9 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria       Nitrospiria bacterium
29229919 29229919 PRJNA689790_S_NODE_14029_length_161_cov_1.879032_g13914_i0 PRJNA689790 14029 161 1.879032 3.02524152 Nitrospirota bacterium 2026887 Bacteria Bacteria 55.8 2.89e-7   NR MBF0343991.1 2026887 g13914 i0 43.4 0.987577639751553 53 30 98.8 0 159 1 323 375 MBF0343991.1 VCBS repeat-containing protein [Nitrospirota bacterium] diamond 159 55.8 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
30978682 30978682 PRJNA689790_S_NODE_12714_length_168_cov_1.480916_g12599_i0 PRJNA689790 12714 168 1.480916 2.48793888 root 1 Root_unresolved Root_unresolved 97.1 9.93e-22   NR WP_053381824.1 42253 g12599 i0 83.3 24.2678571428571 54 9 96.4 0 164 3 221 274 WP_053381824.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Nitrospira moscoviensis] diamond 4077 97.8 0.992842535787321 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
32748916 32748916 PRJNA689790_S_NODE_580_length_922_cov_3.001130_g522_i0 PRJNA689790 580 922 3.00113 27.6704186 Bacteria 2 Bacteria Bacteria 135 7e-33   NR MEW6542765.1 2026887 g522 i0 40.7 2.13774403470716 214 97 68 7 687 61 17 205 MEW6542765.1 SAM-dependent methyltransferase [Nitrospirota bacterium] diamond 1971 135 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;