RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA689790", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA689790 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7047376 7047376 PRJNA689790_S_NODE_9386_length_193_cov_2.288462_g9271_i0 PRJNA689790 9386 193 2.288462 4.41673166 Fluviispira sanaruensis 2493639 Bacteria Bacteria 78.2 6e-15   NR WP_130607314.1 2493639 g9271 i0 75.6 2.00518134715026 45 11 69.9 0 188 54 719 763 WP_130607314.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Fluviispira sanaruensis] diamond 387 78.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
27398545 27398545 PRJNA689790_S_NODE_4823_length_275_cov_5.029412_g4708_i0 PRJNA689790 4823 275 5.029412 13.830883 Micavibrio sp. 2024841 Bacteria Bacteria 57.4 2.78e-7   NR MBX2833619.1 2024841 g4708 i0 51.9 0.589090909090909 54 25 57.8 1 241 83 212 265 MBX2833619.1 carbonic anhydrase family protein [Micavibrio sp.] diamond 162 57.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
29419008 29419008 PRJNA689790_S_NODE_409_length_1153_cov_3.644265_g369_i0 PRJNA689790 409 1153 3.644265 42.01837545 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 254 2.35e-73   NR MEZ4704431.1 3034175 g369 i0 39.2 3.77276669557676 360 195 92.1 7 1141 80 382 723 MEZ4704431.1 hypothetical protein [Bdellovibrionota bacterium] diamond 4350 254 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29513675 29513675 PRJNA689790_S_NODE_12330_length_170_cov_1.751880_g12215_i0 PRJNA689790 12330 170 1.75188 2.978196 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 58.5 3.7e-8   NR HXH76202.1 2081706 g12215 i0 44.4 7.76470588235294 54 30 95.3 0 5 166 855 908 HXH76202.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 1320 58.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29987607 29987607 PRJNA689790_S_NODE_4631_length_282_cov_1.420408_g4516_i0 PRJNA689790 4631 282 1.420408 4.00555056 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 75.9 1.36e-13   NR HLB59612.1 3034175 g4516 i0 47 0.882978723404255 83 44 88.3 0 1 249 619 701 HLB59612.1 S8 family serine peptidase [Bdellovibrionota bacterium] diamond 249 75.9 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29999211 29999211 PRJNA689790_S_NODE_7231_length_220_cov_2.344262_g7116_i0 PRJNA689790 7231 220 2.344262 5.1573764 Bacteria candidate phyla 1783234 Bacteria Bacteria 68.9 1.65e-11   NR HEX4925631.1 2053517 g7116 i0 49.3 9.17727272727273 69 34 94.1 1 219 13 1005 1072 HEX4925631.1 hypothetical protein [Bdellovibrionales bacterium] diamond 2019 69.3 0.994227994227994 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31705720 31705720 PRJNA689790_S_NODE_15657_length_154_cov_2.000000_g15542_i0 PRJNA689790 15657 154 2 3.08 Pseudomonadati 3379134 Bacteria Bacteria 47.4 2.04e-4   NR MCB9063021.1 2026745 g15542 i0 43.5 1.79220779220779 46 22 89.6 1 2 139 172 213 MCB9063021.1 glutathione S-transferase N-terminal domain-containing protein [Halobacteriovoraceae bacterium] diamond 276 47.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
32264006 32264006 PRJNA689790_S_NODE_3978_length_308_cov_1.583026_g3863_i0 PRJNA689790 3978 308 1.583026 4.87572008 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 127 2.02e-35   NR MBK7962734.1 2053517 g3863 i0 57 0.974025974025974 100 43 97.4 0 9 308 16 115 MBK7962734.1 DUF1761 domain-containing protein [Bdellovibrionales bacterium] diamond 300 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;