RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA689790" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA689790 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4496757 4496757 PRJNA689790_S_NODE_15164_length_156_cov_1.915966_g15049_i0 PRJNA689790 15164 156 1.915966 2.98890696 Persicimonas caeni 2292766 Bacteria Bacteria 95.3 2.1e-15   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g15049 i0 79.021 25.0448717948718 143 26 90 3 16 156 4405612 4405752 Persicimonas caeni strain YN101 chromosome blastn 3907 95.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
28029969 28029969 PRJNA689790_S_NODE_3165_length_352_cov_3.949206_g3050_i0 PRJNA689790 3165 352 3.949206 13.90120512 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 Bacteria Bacteria 60.5 6.61e-8   NR PKN31812.1 2013748 g3050 i0 42.3 1.82386363636364 71 37 57.1 2 345 145 187 257 PKN31812.1 MAG: hypothetical protein CVU63_21985 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] diamond 642 60.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;