RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA689790", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA689790 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1944818 1944818 PRJNA689790_S_NODE_9122_length_196_cov_1.471698_g9007_i0 PRJNA689790 9122 196 1.471698 2.88452808 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 99 1.44e-22   NR MBV9773168.1 2026742 g9007 i0 79.7 3.91836734693878 64 13 98 0 4 195 64 127 MBV9773168.1 acetyl-CoA C-acetyltransferase [Gemmatimonadota bacterium] diamond 768 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27050804 27050804 PRJNA689790_S_NODE_482_length_1051_cov_2.671598_g435_i0 PRJNA689790 482 1051 2.671598 28.07849498 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 179 2.8399999999999997e-46   NR MBL8996915.1 2026742 g435 i0 41.4 2.31493815413892 268 140 73.6 6 226 999 545 805 MBL8996915.1 Ig-like domain-containing protein [Gemmatimonadota bacterium] diamond 2433 179 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27125066 27125066 PRJNA689790_S_NODE_5542_length_255_cov_1.903670_g5427_i0 PRJNA689790 5542 255 1.90367 4.8543585 root 1 Root_unresolved Root_unresolved 94.4 3.1e-20   NR HUP18400.1 2026742 g5427 i0 55.7 14.0588235294118 88 29 94.1 3 7 246 525 610 HUP18400.1 choice-of-anchor B family protein [Gemmatimonadota bacterium] diamond 3585 94.7 0.996832101372756 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27145149 27145149 PRJNA689790_S_NODE_7462_length_216_cov_2.832402_g7347_i0 PRJNA689790 7462 216 2.832402 6.11798832 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.4 0.0344   NR MFI5231936.1 2448054 g7347 i0 43.4 0.736111111111111 53 30 73.6 0 15 173 238 290 MFI5231936.1 CHASE3 domain-containing protein [Gemmatimonadales bacterium] diamond 159 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29198293 29198293 PRJNA689790_S_NODE_509_length_1015_cov_4.352761_g459_i0 PRJNA689790 509 1015 4.352761 44.18052415 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 160 3.94e-43   NR HEX2217275.1 2448054 g459 i0 42.8 0.614778325123153 208 113 60.9 5 1009 392 42 245 HEX2217275.1 leishmanolysin-related zinc metalloendopeptidase [Gemmatimonadales bacterium] diamond 624 160 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30019328 30019328 PRJNA689790_S_NODE_10871_length_180_cov_1.909091_g10756_i0 PRJNA689790 10871 180 1.909091 3.4363638 uncultured Gemmatimonadota bacterium 203437 Bacteria Bacteria 41.6 0.0423   NR CAA9322050.1 203437 g10756 i0 53.1 0.533333333333333 32 15 53.3 0 153 58 336 367 CAA9322050.1 MAG: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII, partial [uncultured Gemmatimonadota bacterium] diamond 96 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         uncultured Gemmatimonadota bacterium
30524641 30524641 PRJNA689790_S_NODE_14173_length_160_cov_2.845528_g14058_i0 PRJNA689790 14173 160 2.845528 4.5528448 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.5 0.00612   NR MBI4521706.1 2026742 g14058 i0 41.7 0.9 48 27 90 1 158 15 133 179 MBI4521706.1 peptidase [Gemmatimonadota bacterium] diamond 144 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32358921 32358921 PRJNA689790_S_NODE_16219_length_152_cov_1.695652_g16104_i0 PRJNA689790 16219 152 1.695652 2.57739104 Longimicrobiales bacterium 2910168 Bacteria Bacteria 77 8.71e-15   NR HEY0673359.1 2910168 g16104 i0 70 6.53289473684211 50 15 98.7 0 2 151 1395 1444 HEY0673359.1 glucoamylase family protein [Longimicrobiales bacterium] diamond 993 77 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;