RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA688931" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA688931 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9597064 9597064 PRJNA688931_P_NODE_30728_length_183_cov_1.156716_g30515_i0 PRJNA688931 30728 183 1.156716 2.11679028 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 65.8 2e-6   NTclustered gi|2794863251|ref|XM_067914699.1| 135588 g30515 i0 87.5 0.306010928961749 56 7 31 0 97 152 346 291 Histomonas meleagridis ribosomal protein L24 (GO595_001855), partial mRNA blastn 56 65.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
12147954 12147954 PRJNA688931_P_NODE_5190_length_488_cov_1.665148_g4978_i0 PRJNA688931 5190 488 1.665148 8.12592224 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 120 1.21e-30   NR XP_001305092.1 412133 g4978 i0 49.3 1.65983606557377 134 64 79.9 1 1 390 21 154 XP_001305092.1 small Rab GTPase Rab1a [Trichomonas vaginalis G3] diamond 810 120 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
24129939 24129939 PRJNA688931_P_NODE_14219_length_274_cov_2.613333_g14006_i0 PRJNA688931 14219 274 2.613333 7.16053242 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 94 1.4500000000000002e-21   NR XP_068361577.1 1144522 g14006 i0 48.7 23.8248175182482 78 40 85.4 0 35 268 7 84 XP_068361577.1 small GTP-binding protein [Tritrichomonas foetus] diamond 6528 94 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27208520 27208520 PRJNA688931_P_NODE_26322_length_199_cov_1.186667_g26109_i0 PRJNA688931 26322 199 1.186667 2.36146733 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 44.7 0.00443   NR XP_001322870.1 412133 g26109 i0 42 4.20603015075377 69 37 99.5 1 198 1 515 583 XP_001322870.1 positive regulation of protein exit from endoplasmic reticulum [Trichomonas vaginalis G3] diamond 837 44.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28451995 28451995 PRJNA688931_P_NODE_22366_length_216_cov_2.089820_g22153_i0 PRJNA688931 22366 216 2.08982 4.5140112 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.0104   NR XP_067779333.1 135588 g22153 i0 52.1 2.48611111111111 48 19 66.7 1 210 67 11 54 XP_067779333.1 putative tRNA (guanine(26)-N(2))-dimethyltransferase [Histomonas meleagridis] diamond 537 44.3 0.99097065462754 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30367102 30367102 PRJNA688931_P_NODE_3752_length_579_cov_70.726415_g3553_i0 PRJNA688931 3752 579 70.726415 409.50594285 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.23e-61   NR XP_068360038.1 1144522 g3553 i0 57.2 6.36787564766839 173 74 89.6 0 550 32 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 3687 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30967105 30967105 PRJNA688931_P_NODE_21774_length_219_cov_1.670588_g21561_i0 PRJNA688931 21774 219 1.670588 3.65858772 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 58.5 7.59e-8   NR XP_068348039.1 1144522 g21561 i0 42.6 1.78082191780822 68 36 89 2 213 19 394 461 XP_068348039.1 uncharacterized protein TRFO_10849 [Tritrichomonas foetus] diamond 390 58.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31788873 31788873 PRJNA688931_P_NODE_37357_length_167_cov_0.872881_g37144_i0 PRJNA688931 37357 167 0.872881 1.45771127 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 45.8 0.00108   NR XP_068357425.1 1144522 g37144 i0 42.9 0.880239520958084 49 28 88 0 151 5 272 320 XP_068357425.1 Casein kinase I hhp1 [Tritrichomonas foetus] diamond 147 45.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32137192 32137192 PRJNA688931_P_NODE_23678_length_210_cov_1.577640_g23465_i0 PRJNA688931 23678 210 1.57764 3.313044 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 43.5 0.0131   NR XP_068369539.1 1144522 g23465 i0 42.3 0.742857142857143 52 29 72.9 1 55 207 113 164 XP_068369539.1 Lecithin:cholesterol acyltransferase family protein [Tritrichomonas foetus] diamond 156 43.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32390249 32390249 PRJNA688931_P_NODE_28099_length_192_cov_1.335664_g27886_i0 PRJNA688931 28099 192 1.335664 2.56447488 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 60.8 7.67e-9   NR XP_067769127.1 135588 g27886 i0 44.8 1.8125 58 32 90.6 0 175 2 534 591 XP_067769127.1 AChain A, putative pre-mRNA splicing factor [Histomonas meleagridis] diamond 348 60.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32906258 32906258 PRJNA688931_P_NODE_28060_length_192_cov_1.440559_g27847_i0 PRJNA688931 28060 192 1.440559 2.76587328 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.9 6e-10   NR XP_068357145.1 1144522 g27847 i0 51.7 2.5625 58 27 89.1 1 178 8 142 199 XP_068357145.1 AGC family protein kinase [Tritrichomonas foetus] diamond 492 64.3 0.993779160186625 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;