RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688931" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688931 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21071051 21071051 PRJNA688931_P_NODE_4257_length_542_cov_2.793103_g4049_i0 PRJNA688931 4257 542 2.793103 15.13861826 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 54.7 0.015   NTclustered gi|2717001286|gb|CP146010.1| 29562 g4049 i0 100 0.0535055350553506 29 0 5 0 441 469 691135 691163 Mesomycoplasma ovipneumoniae strain OCAVM_190653 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae
28345550 28345550 PRJNA688931_P_NODE_25786_length_201_cov_1.355263_g25573_i0 PRJNA688931 25786 201 1.355263 2.72407863 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 61.2 5.93e-9   NR MDO5393127.1 2231116 g25573 i0 54.4 0.850746268656716 57 26 85.1 0 3 173 158 214 MDO5393127.1 AAA family ATPase [Mycoplasmatota bacterium] diamond 171 61.2 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
30272151 30272151 PRJNA688931_P_NODE_25992_length_200_cov_1.602649_g25779_i0 PRJNA688931 25992 200 1.602649 3.205298 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 60.1 1.35e-8   NR QWB96199.1 2231116 g25779 i0 43.9 1.95 66 35 99 1 2 199 134 197 QWB96199.1 SDR family NAD(P)-dependent oxidoreductase [Mycoplasmatota bacterium] diamond 390 60.1 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;