RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA688931" and tax_phylum = "Foraminifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA688931 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8830991 8830991 PRJNA688931_P_NODE_11327_length_312_cov_1.980989_g11114_i0 PRJNA688931 11327 312 1.9809890000000001 6.18068568 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 80.1 3.3e-16   NR ETO25247.1 46433 g11114 i0 48.6 3.49038461538462 72 37 69.2 0 299 84 27 98 ETO25247.1 hypothetical protein RFI_11891 [Reticulomyxa filosa] diamond 1089 80.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
15971088 15971088 PRJNA688931_P_NODE_11053_length_316_cov_1.936330_g10840_i0 PRJNA688931 11053 316 1.93633 6.1188028 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 149 5.859999999999998e-41   NR ETO09453.1 46433 g10840 i0 72.4 0.996835443037975 105 26 99.7 2 1 315 196 297 ETO09453.1 hypothetical protein RFI_27925 [Reticulomyxa filosa] diamond 315 149 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
20304432 20304432 PRJNA688931_P_NODE_16656_length_252_cov_0.886700_g16443_i0 PRJNA688931 16656 252 0.8867 2.234484 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 230 9.84e-56   NTclustered gi|998623043|dbj|LC049322.1| 51039 g16443 i0 93.125 24.1309523809524 160 6 62 3 76 231 3535 3693 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 6081 230 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei
28136249 28136249 PRJNA688931_P_NODE_4525_length_524_cov_2.050526_g4315_i0 PRJNA688931 4525 524 2.050526 10.74475624 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 57 3.47e-6   NR ETO11899.1 46433 g4315 i0 28.4 1.87213740458015 169 107 90.5 4 501 28 48 213 ETO11899.1 hypothetical protein RFI_25477 [Reticulomyxa filosa] diamond 981 57.4 0.993031358885017 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;