RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688931" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688931 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29671349 29671349 PRJNA688931_P_NODE_37290_length_167_cov_0.881356_g37077_i0 PRJNA688931 37290 167 0.881356 1.47186452 Fibrobacter sp. 35828 Bacteria Bacteria 84.7 1.68e-17   NR NLD98946.1 35828 g37077 i0 69.8 1.90419161676647 53 16 95.2 0 160 2 1 53 NLD98946.1 phosphoglycerate kinase [Fibrobacter sp.] diamond 318 84.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31377978 31377978 PRJNA688931_P_NODE_11236_length_313_cov_4.034091_g11023_i0 PRJNA688931 11236 313 4.034091 12.62670483 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 46.6 0.00355   NR MFP4415963.1 2813024 g11023 i0 31.8 0.843450479233227 88 53 77.6 2 256 14 277 364 MFP4415963.1 aminopeptidase [Chitinispirillaceae bacterium] diamond 264 46.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;