RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA688931" and tax_phylum = "Chlorobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688931 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31389583 31389583 PRJNA688931_P_NODE_38176_length_166_cov_0.888889_g37963_i0 PRJNA688931 38176 166 0.888889 1.47555574 Pseudomonadati 3379134 Bacteria Bacteria 53.1 4.33e-7   NR HWQ26077.1 2053530 g37963 i0 64.9 1.31927710843373 37 13 66.9 0 164 54 79 115 HWQ26077.1 DCC1-like thiol-disulfide oxidoreductase family protein [Chlorobaculum sp.] diamond 219 53.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp.
32654170 32654170 PRJNA688931_P_NODE_6960_length_412_cov_2.198347_g6747_i0 PRJNA688931 6960 412 2.198347 9.05718964 Pseudomonadati 3379134 Bacteria Bacteria 83.2 1.71e-15   NR MDT7923550.1 2268192 g6747 i0 40.9 5.41747572815534 127 64 91 4 377 3 14 131 MDT7923550.1 V-type H(+)-translocating pyrophosphatase [Chlorobiota bacterium] diamond 2232 83.2 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;