contig_metadata
11 rows where bioproject = "PRJNA688931" and tax_kingdom = "Thermotogati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2453325 | 2453325 | PRJNA688931_P_NODE_15422_length_262_cov_4.244131_g15209_i0 | PRJNA688931 | 15422 | 262 | 4.244131 | 11.11962322 | Deinococcus | 1298 | Bacteria | Bacteria | 411 | 3.419999999999999e-110 | NTclustered | gi|2706837832|gb|CP149782.1| | 3112952 | g15209 | i0 | 95.367 | 262.095419847328 | 259 | 11 | 100 | 1 | 1 | 259 | 1454023 | 1454280 | Deinococcus sp. VB142 chromosome 1, complete sequence | blastn | 68669 | 411 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. VB142 | ||
| 2453351 | 2453351 | PRJNA688931_P_NODE_29022_length_189_cov_1.042857_g28809_i0 | PRJNA688931 | 29022 | 189 | 1.042857 | 1.97099973 | Deinococcus | 1298 | Bacteria | Bacteria | 333 | 5.169999999999999e-87 | NTclustered | gi|1751871007|dbj|AP021849.1| | 57498 | g28809 | i0 | 98.413 | 268.407407407407 | 189 | 3 | 100 | 0 | 1 | 189 | 423047 | 422859 | Deinococcus grandis ATCC 43672 DNA, complete genome | blastn | 50729 | 333 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus grandis | ||
| 4496682 | 4496682 | PRJNA688931_P_NODE_4784_length_510_cov_1.711497_g4572_i0 | PRJNA688931 | 4784 | 510 | 1.711497 | 8.7286347 | Deinococcus soli (ex Cha et al. 2016) | 1309411 | Bacteria | Bacteria | 680 | 0 | NTclustered | gi|821341785|gb|CP011389.1| | 1309411 | g4572 | i0 | 91.142 | 732.617647058824 | 508 | 35 | 99 | 7 | 1 | 506 | 1637546 | 1638045 | 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome | blastn | 373635 | 680 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus soli (ex Cha et al. 2016) | ||
| 5006396 | 5006396 | PRJNA688931_P_NODE_27324_length_195_cov_1.404110_g27111_i0 | PRJNA688931 | 27324 | 195 | 1.40411 | 2.7380145 | Fervidobacterium | 2422 | Bacteria | Bacteria | 355 | 1.15e-93 | NTclustered | gi|444439378|ref|NR_074093.1| | 2424 | g27111 | i0 | 99.487 | 109.979487179487 | 195 | 1 | 100 | 0 | 1 | 195 | 650 | 844 | Fervidobacterium nodosum strain Rt17-B1 16S ribosomal RNA, partial sequence | blastn | 21446 | 355 | 1 | Bacteria | Thermotogati | Thermotogota | Thermotogae | Thermotogales | Fervidobacteriaceae | Fervidobacterium | Fervidobacterium nodosum | ||
| 13422384 | 13422384 | PRJNA688931_P_NODE_25351_length_203_cov_1.292208_g25138_i0 | PRJNA688931 | 25351 | 203 | 1.292208 | 2.62318224 | Deinococcus sp. NW-56 | 2080419 | Bacteria | Bacteria | 178 | 2.8e-40 | NTclustered | gi|1339790003|gb|CP026516.1| | 2080419 | g25138 | i0 | 82.775 | 202.068965517241 | 209 | 26 | 100 | 10 | 1 | 203 | 544584 | 544788 | Deinococcus sp. NW-56 chromosome, complete genome | blastn | 41020 | 178 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. NW-56 | ||
| 14697365 | 14697365 | PRJNA688931_P_NODE_18372_length_239_cov_1.689474_g18159_i0 | PRJNA688931 | 18372 | 239 | 1.689474 | 4.03784286 | Deinococcus metallilatus | 1211322 | Bacteria | Bacteria | 291 | 4.18e-74 | NTclustered | gi|1609451317|gb|CP038512.1| | 1211322 | g18159 | i0 | 91.163 | 275.924686192469 | 215 | 18 | 90 | 1 | 25 | 239 | 329263 | 329476 | Deinococcus metallilatus strain MA1002 chromosome | blastn | 65946 | 291 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus metallilatus | ||
| 14697493 | 14697493 | PRJNA688931_P_NODE_33932_length_172_cov_2.089431_g33719_i0 | PRJNA688931 | 33932 | 172 | 2.089431 | 3.59382132 | Deinococcus soli (ex Cha et al. 2016) | 1309411 | Bacteria | Bacteria | 307 | 2.79e-79 | NTclustered | gi|821341785|gb|CP011389.1| | 1309411 | g33719 | i0 | 98.837 | 271.052325581395 | 172 | 2 | 100 | 0 | 1 | 172 | 1637335 | 1637164 | 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome | blastn | 46621 | 307 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus soli (ex Cha et al. 2016) | ||
| 17755961 | 17755961 | PRJNA688931_P_NODE_35154_length_169_cov_1.016667_g34941_i0 | PRJNA688931 | 35154 | 169 | 1.016667 | 1.71816723 | Deinococcus | 1298 | Bacteria | Bacteria | 274 | 2.7699999999999997e-69 | NTclustered | gi|1751871007|dbj|AP021849.1| | 57498 | g34941 | i0 | 95.858 | 204.668639053254 | 169 | 7 | 100 | 0 | 1 | 169 | 73136 | 73304 | Deinococcus grandis ATCC 43672 DNA, complete genome | blastn | 34589 | 274 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus grandis | ||
| 24894611 | 24894611 | PRJNA688931_P_NODE_18920_length_235_cov_3.537634_g18707_i0 | PRJNA688931 | 18920 | 235 | 3.537634 | 8.3134399 | Deinococcus metallilatus | 1211322 | Bacteria | Bacteria | 342 | 1.12e-89 | NTclustered | gi|1609451317|gb|CP038512.1| | 1211322 | g18707 | i0 | 94.977 | 170.753191489362 | 219 | 10 | 93 | 1 | 17 | 235 | 329519 | 329736 | Deinococcus metallilatus strain MA1002 chromosome | blastn | 40127 | 342 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus metallilatus | ||
| 27966605 | 27966605 | PRJNA688931_P_NODE_17525_length_245_cov_1.806122_g17312_i0 | PRJNA688931 | 17525 | 245 | 1.806122 | 4.4249989 | Kosmotoga sp. | 1955248 | Bacteria | Bacteria | 70.5 | 3.19e-13 | NR | TYB88804.1 | 1955248 | g17312 | i0 | 52.6 | 2.26530612244898 | 57 | 27 | 69.8 | 0 | 243 | 73 | 75 | 131 | TYB88804.1 MAG: MaoC family dehydratase [Kosmotoga sp.] | diamond | 555 | 70.5 | 1 | Bacteria | Thermotogati | Thermotogota | Thermotogae | Kosmotogales | Kosmotogaceae | Kosmotoga | Kosmotoga sp. | ||
| 29967519 | 29967519 | PRJNA688931_P_NODE_10531_length_325_cov_1.293478_g10318_i0 | PRJNA688931 | 10531 | 325 | 1.293478 | 4.2038035 | Deinococcus | 1298 | Bacteria | Bacteria | 135 | 3.38e-36 | NR | WP_027463593.1 | 317577 | g10318 | i0 | 69.6 | 8.34461538461538 | 102 | 28 | 94.2 | 1 | 308 | 3 | 1 | 99 | WP_027463593.1 malate dehydrogenase [Deinococcus ficus] | diamond | 2712 | 135 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus ficus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;