RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA688931", tax_clade = "Stenosarchaea group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 7 ✖

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 7 ✖

bioproject 1

  • PRJNA688931 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23621318 23621318 PRJNA688931_P_NODE_18939_length_235_cov_2.521505_g18726_i0 PRJNA688931 18939 235 2.521505 5.92553675 Halomarina pelagica 2961599 Archaea Archaea 71.3 5.81e-8   NTclustered gi|2270305250|gb|CP100454.1| 2961599 g18726 i0 92 1.15744680851064 50 4 21 0 173 222 1375429 1375380 Halomarina pelagica strain BND7 chromosome, complete genome blastn 272 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halomarina Halomarina pelagica
27556026 27556026 PRJNA688931_P_NODE_36144_length_168_cov_0.873950_g35931_i0 PRJNA688931 36144 168 0.87395 1.468236 Halonotius sp. F2-221B 2731620 Archaea Archaea 41.6 0.0346   NR WP_411797635.1 2731620 g35931 i0 48.8 0.767857142857143 43 20 76.8 1 23 151 249 289 WP_411797635.1 histidine kinase N-terminal 7TM domain-containing protein [Halonotius sp. F2-221B] diamond 129 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius sp. F2-221B
28356979 28356979 PRJNA688931_P_NODE_42566_length_163_cov_0.894737_g42353_i0 PRJNA688931 42566 163 0.894737 1.45842131 root 1 Root_unresolved Root_unresolved 46.6 5.64e-4   NR HDS44682.1 2268195 g42353 i0 43.2 10.6748466257669 44 25 81 0 132 1 251 294 HDS44682.1 hypothetical protein [Methanomicrobia archaeon] diamond 1740 46.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia       Methanomicrobia archaeon
29746114 29746114 PRJNA688931_P_NODE_5290_length_483_cov_2.048387_g5078_i0 PRJNA688931 5290 483 2.048387 9.89370921 Methanomicrobia 224756 Archaea Archaea 124 1.15e-30   NR MCX6675397.1 90426 g5078 i0 46.5 4.77639751552795 129 68 80.1 1 388 2 123 250 MCX6675397.1 translation elongation factor EF-1 subunit alpha [Methanothrix sp.] diamond 2307 125 0.992 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29797873 29797873 PRJNA688931_P_NODE_30051_length_185_cov_1.485294_g29838_i0 PRJNA688931 30051 185 1.485294 2.7477939 Methanosarcina hadiensis 3078083 Archaea Archaea 41.6 0.0434   NR WP_410508748.1 3078083 g29838 i0 38.8 0.794594594594595 49 26 73 1 15 149 59 107 WP_410508748.1 PHP domain-containing protein [Methanosarcina hadiensis] diamond 147 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina hadiensis
31694124 31694124 PRJNA688931_P_NODE_1797_length_845_cov_3.276382_g1645_i0 PRJNA688931 1797 845 3.276382 27.6854279 Methanoregulaceae archaeon 2485498 Archaea Archaea 69.7 2.68e-9   NR HNJ81026.1 2485498 g1645 i0 53.3 0.21301775147929 60 26 21.3 1 741 562 603 660 HNJ81026.1 Ig-like domain-containing protein [Methanoregulaceae archaeon] diamond 180 69.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
31757463 31757463 PRJNA688931_P_NODE_40557_length_164_cov_0.904348_g40344_i0 PRJNA688931 40557 164 0.904348 1.48313072 Methanoregula sp. 2052170 Archaea Archaea 53.1 2.67e-6   NR MCX6691449.1 2052170 g40344 i0 47.9 0.878048780487805 48 25 87.8 0 4 147 140 187 MCX6691449.1 CinA family protein [Methanoregula sp.] diamond 144 53.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;