RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA688931", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA688931 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28282211 28282211 PRJNA688931_P_NODE_24086_length_208_cov_2.251572_g23873_i0 PRJNA688931 24086 208 2.251572 4.68326976 Minisyncoccota bacterium 2053589 Bacteria Bacteria 58.2 8.52e-8   NR MDR3582248.1 2053589 g23873 i0 47.1 1.00961538461538 70 36 99.5 1 2 208 182 251 MDR3582248.1 clusterin-associated protein 1 [Candidatus Paceibacterota bacterium] diamond 210 58.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30019304 30019304 PRJNA688931_P_NODE_36211_length_168_cov_0.873950_g35998_i0 PRJNA688931 36211 168 0.87395 1.468236 Minisyncoccota bacterium 2053589 Bacteria Bacteria 45.1 5.87e-4   NR MDR3570671.1 2053589 g35998 i0 88.5 0.464285714285714 26 3 46.4 0 1 78 82 107 MDR3570671.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 78 45.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30493095 30493095 PRJNA688931_P_NODE_2193_length_768_cov_2.692629_g2032_i0 PRJNA688931 2193 768 2.692629 20.67939072 Minisyncoccota bacterium 2053589 Bacteria Bacteria 141 5.4299999999999997e-39   NR MDR3549538.1 2053589 g2032 i0 66.3 0.3828125 98 33 38.3 0 732 439 8 105 MDR3549538.1 small nuclear ribonucleoprotein Sm D2 [Candidatus Paceibacterota bacterium] diamond 294 141 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31947086 31947086 PRJNA688931_P_NODE_38937_length_166_cov_0.871795_g38724_i0 PRJNA688931 38937 166 0.871795 1.4471797 Minisyncoccota bacterium 2053589 Bacteria Bacteria 41.2 0.00731   NR MDR3581786.1 2053589 g38724 i0 47.5 0.72289156626506 40 21 72.3 0 164 45 28 67 MDR3581786.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 120 41.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;