RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688736" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688736 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28977177 28977177 PRJNA688736_P_NODE_47068_length_246_cov_0.901734_g46783_i0 PRJNA688736 47068 246 0.901734 2.21826564 Halorussus ruber 1126238 Archaea Archaea 44.3 0.00982   NR WP_135825043.1 1126238 g46783 i0 40 0.731707317073171 60 30 70.7 2 241 68 49 104 WP_135825043.1 HpcH/HpaI aldolase family protein [Halorussus ruber] diamond 180 44.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus ruber
30335439 30335439 PRJNA688736_P_NODE_43252_length_250_cov_0.881356_g42967_i0 PRJNA688736 43252 250 0.881356 2.20339 archaeon 1906665 Archaea Archaea 85.1 2.24e-18   NR RYH20413.1 1906665 g42967 i0 44.6 0.996 83 46 99.6 0 250 2 101 183 RYH20413.1 MAG: NAD(P)H-dependent oxidoreductase [archaeon] diamond 249 85.1 1 Archaea               archaeon
30777444 30777444 PRJNA688736_P_NODE_39674_length_253_cov_1.411111_g39389_i0 PRJNA688736 39674 253 1.411111 3.57011083 archaeon 1906665 Archaea Archaea 157 3.04e-44   NR MDP2438834.1 1906665 g39389 i0 84.5 0.99604743083004 84 13 99.6 0 1 252 167 250 MDP2438834.1 molecular chaperone HtpG [archaeon] diamond 252 157 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;