RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688736", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688736 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7555564 7555564 PRJNA688736_P_NODE_37206_length_262_cov_1.650794_g36921_i0 PRJNA688736 37206 262 1.650794 4.32508028 Desulfovibrio 872 Bacteria Bacteria 466 7.199999999999998e-127   NTclustered gi|197717653|gb|EU980606.1| 876 g36921 i0 98.851 105.545801526718 261 3 99 0 2 262 297 37 Desulfovibrio desulfuricans strain Ser-2 16S ribosomal RNA gene, partial sequence blastn 27653 466 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
20304183 20304183 PRJNA688736_P_NODE_46156_length_247_cov_0.896552_g45871_i0 PRJNA688736 46156 247 0.896552 2.21448344 Desulfocurvibacter 2582840 Bacteria Bacteria 263 9.47e-66   NTclustered gi|470489697|ref|NR_076945.1| 873 g45871 i0 85.771 210.534412955466 253 30 100 4 1 247 1143 1395 Desulfovibrio africanus strain Walvis Bay 23S ribosomal RNA gene, complete sequence blastn 52002 263 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvibacter Desulfocurvibacter africanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;