RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688736", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688736 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18520105 18520105 PRJNA688736_P_NODE_43255_length_250_cov_0.881356_g42970_i0 PRJNA688736 43255 250 0.881356 2.20339 Pseudomyxococcus hansupus 1297742 Bacteria Bacteria 102 2.22e-17   NTclustered gi|891158403|gb|CP012109.1| 1297742 g42970 i0 95.312 24.996 64 3 26 0 186 249 426345 426282 Myxococcus hansupus strain mixupus chromosome, complete genome blastn 6249 102 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pseudomyxococcus Pseudomyxococcus hansupus
29198215 29198215 PRJNA688736_P_NODE_45529_length_247_cov_0.896552_g45244_i0 PRJNA688736 45529 247 0.896552 2.21448344 Myxococcales bacterium 2026763 Bacteria Bacteria 75.1 1.64e-13   NR GMV39584.1 2026763 g45244 i0 45.8 3.46153846153846 72 37 85 1 216 7 161 232 GMV39584.1 MAG: hypothetical protein AMXMBFR64_13000 [Myxococcales bacterium] diamond 855 75.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31852189 31852189 PRJNA688736_P_NODE_2257_length_902_cov_2.716526_g2066_i0 PRJNA688736 2257 902 2.716526 24.50306452 Myxococcota bacterium 2818507 Bacteria Bacteria 49.7 0.00225   NR MEM9458293.1 2818507 g2066 i0 37.2 0.585365853658537 78 39 25.9 2 768 535 86 153 MEM9458293.1 EF-hand domain-containing protein [Myxococcota bacterium] diamond 528 49.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;