RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA688736" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA688736 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2452776 2452776 PRJNA688736_P_NODE_31162_length_287_cov_1.443925_g30877_i0 PRJNA688736 31162 287 1.443925 4.14406475 Vahlkampfia 5770 Heterolobosea other_Eukaryota 531 2.799999999999999e-146   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g30877 i0 100 78.9059233449477 287 0 100 0 1 287 698 412 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 22646 531 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
9596189 9596189 PRJNA688736_P_NODE_25928_length_312_cov_1.305439_g25643_i0 PRJNA688736 25928 312 1.305439 4.07296968 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 141 6.05e-29   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g25643 i0 87.2 12.599358974359 125 15 40 1 1 125 4268 4145 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3931 141 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
18520268 18520268 PRJNA688736_P_NODE_49635_length_243_cov_0.917647_g49350_i0 PRJNA688736 49635 243 0.917647 2.22988221 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 224 4.3899999999999996e-54   NTclustered gi|2119427415|ref|XM_044701330.1| 5763 g49350 i0 83.682 16.9588477366255 239 37 98 2 2 239 991 754 Naegleria fowleri uncharacterized protein (FDP41_010973), partial mRNA blastn 4121 224 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
19795011 19795011 PRJNA688736_P_NODE_44796_length_248_cov_0.891429_g44511_i0 PRJNA688736 44796 248 0.891429 2.21074392 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 315 2.59e-81   NTclustered gi|291002088|ref|XM_002683565.1| 5762 g44511 i0 91.026 0.943548387096774 234 20 94 1 5 238 1121 889 Naegleria gruberi seryl-tRNA synthetase (NAEGRDRAFT_77836), mRNA blastn 234 315 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27398457 27398457 PRJNA688736_P_NODE_49243_length_243_cov_1.429412_g48958_i0 PRJNA688736 49243 243 1.429412 3.47347116 Acrasis kona 1008807 Heterolobosea other_Eukaryota 78.6 8.68e-15   NR KAL0484970.1 1008807 g48958 i0 43.6 0.962962962962963 78 41 96.3 2 2 235 229 303 KAL0484970.1 BRCA1-associated protein [Acrasis kona] diamond 234 78.6 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29671296 29671296 PRJNA688736_P_NODE_41130_length_252_cov_0.871508_g40845_i0 PRJNA688736 41130 252 0.871508 2.19620016 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 76.6 4.83e-14   NR XP_002682656.1 5762 g40845 i0 44 2.78571428571429 84 47 100 0 252 1 119 202 XP_002682656.1 uncharacterized protein NAEGRDRAFT_29590 [Naegleria gruberi] diamond 702 76.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;