RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688736", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA688736 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12146869 12146869 PRJNA688736_P_NODE_21530_length_338_cov_1.596226_g21245_i0 PRJNA688736 21530 338 1.596226 5.39524388 Rhizophlyctis rosea 64517 Fungi Fungi 111 7.13e-29   NR KAJ3038852.1 64517 g21245 i0 62 1.63313609467456 92 34 81.7 1 2 277 36 126 KAJ3038852.1 profilin, required for normal timing of actin polymerization in response to thermal stress [Rhizophlyctis rosea] diamond 552 111 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
21070404 21070404 PRJNA688736_P_NODE_40237_length_253_cov_0.866667_g39952_i0 PRJNA688736 40237 253 0.866667 2.19266751 Chytridiomycetes 451435 Fungi Fungi 104 1.46e-25   NR RKP02268.1 1555241 g39952 i0 59 9.78260869565217 83 34 98.4 0 251 3 10 92 RKP02268.1 hypothetical protein CXG81DRAFT_25047 [Caulochytrium protostelioides] diamond 2475 105 0.990476190476191 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Caulochytriales Caulochytriaceae Caulochytrium Caulochytrium protostelioides
26987232 26987232 PRJNA688736_P_NODE_41482_length_251_cov_1.752809_g41197_i0 PRJNA688736 41482 251 1.752809 4.39955059 Spizellomyces sp. 'palustris' 117820 Fungi Fungi 63.5 3.75e-10   NR TPX62495.1 117820 g41197 i0 51.2 4.88844621513944 82 33 98 3 2 247 56 130 TPX62495.1 hypothetical protein SpCBS45565_g07002 [Spizellomyces sp. 'palustris'] diamond 1227 63.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;