RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688736" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA688736 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13422057 13422057 PRJNA688736_P_NODE_46691_length_246_cov_0.901734_g46406_i0 PRJNA688736 46691 246 0.901734 2.21826564 Eukaryota 2759 Plants Plants 154 2.319999999999999e-41   NR RMZ54296.1 3075 g46406 i0 95.1 365.378048780488 81 4 98.8 0 3 245 574 654 RMZ54296.1 hypothetical protein APUTEX25_001454, partial [Auxenochlorella protothecoides] diamond 89883 155 0.993548387096774 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
27251798 27251798 PRJNA688736_P_NODE_31083_length_287_cov_2.574766_g30798_i0 PRJNA688736 31083 287 2.574766 7.38957842 Eukaryota 2759 Plants Plants 112 1.87e-30   NR WIA12047.1 3088 g30798 i0 77.1 5.23693379790941 70 16 73.2 0 273 64 1 70 WIA12047.1 hypothetical protein OEZ85_012126 [Tetradesmus obliquus] diamond 1503 113 0.991150442477876 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
30757348 30757348 PRJNA688736_P_NODE_49094_length_244_cov_0.900585_g48809_i0 PRJNA688736 49094 244 0.900585 2.1974274 Eukaryota 2759 Plants Plants 130 5.17e-33   NR XP_042916740.1 3055 g48809 i0 77.8 59.6803278688525 81 18 99.6 0 1 243 459 539 XP_042916740.1 uncharacterized protein CHLRE_14g614900v5 [Chlamydomonas reinhardtii] diamond 14562 131 0.99236641221374 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;