RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA688736", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA688736 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668267 668267 PRJNA688736_P_NODE_5881_length_600_cov_2.574953_g5603_i0 PRJNA688736 5881 600 2.574953 15.449718 Naviculales sp. 2126271 SAR_Eukaryotes SAR_Eukaryotes 1037 0   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g5603 i0 97.99 198.581666666667 597 12 100 0 4 600 121358 120762 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 119149 1037 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.
5771543 5771543 PRJNA688736_P_NODE_38265_length_258_cov_1.648649_g37980_i0 PRJNA688736 38265 258 1.648649 4.25351442 Humidophila perpusilla 1574070 SAR_Eukaryotes SAR_Eukaryotes 364 2.6599999999999992e-96   NTclustered gi|725539090|gb|KM407563.1| 1574070 g37980 i0 92.248 98.7441860465116 258 19 100 1 1 258 37 293 Diadesmis perpusilla isolate Ant013-D09 28S ribosomal RNA gene, partial sequence blastn 25476 364 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales   Humidophila Humidophila perpusilla
20303994 20303994 PRJNA688736_P_NODE_36616_length_264_cov_2.041885_g36331_i0 PRJNA688736 36616 264 2.041885 5.3905764 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 206 1.75e-48   NTclustered gi|2088246177|ref|NC_057078.1| 671091 g36331 i0 82.906 87.6590909090909 234 35 88 5 34 264 27645 27876 Coscinodiscus wailesii mitochondrion, complete genome blastn 23142 206 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Coscinodiscales Coscinodiscaceae Coscinodiscus Coscinodiscus wailesii
21579282 21579282 PRJNA688736_P_NODE_13917_length_408_cov_1.641791_g13632_i0 PRJNA688736 13917 408 1.641791 6.69850728 Phaeodactylum 2849 SAR_Eukaryotes SAR_Eukaryotes 532 1.15e-146   NTclustered gi|146762526|gb|EF553458.1| 2850 g13632 i0 92.105 96.796568627451 380 26 92 4 32 408 4591 4213 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 39493 532 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
28408751 28408751 PRJNA688736_P_NODE_45666_length_247_cov_0.896552_g45381_i0 PRJNA688736 45666 247 0.896552 2.21448344 Fragilariopsis cylindrus CCMP11 186039 SAR_Eukaryotes SAR_Eukaryotes 105 2.1e-24   NR OEU21942.1 635003 g45381 i0 58.8 0.97165991902834 80 33 97.2 0 242 3 162 241 OEU21942.1 hypothetical protein FRACYDRAFT_232090 [Fragilariopsis cylindrus CCMP1102] diamond 240 105 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;