RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA688736" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 29 ✖

bioproject 1

  • PRJNA688736 · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
667812 667812 PRJNA688736_P_NODE_34261_length_274_cov_1.467662_g33976_i0 PRJNA688736 34261 274 1.467662 4.02139388 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 92 3.47e-21   NR EPY25395.1 59799 g33976 i0 60.2 5.83576642335766 83 26 90.9 1 249 1 9 84 EPY25395.1 nascent polypeptide-associated complex subunit alpha [Angomonas deanei] diamond 1599 92 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
668143 668143 PRJNA688736_P_NODE_47841_length_245_cov_0.906977_g47556_i0 PRJNA688736 47841 245 0.906977 2.22209365 Bodo saltans 75058 Euglenozoa other_Eukaryota 166 2.9399999999999995e-48   NR CUG44733.1 75058 g47556 i0 100 0.991836734693878 81 0 99.2 0 1 243 27 107 CUG44733.1 pyruvate dehydrogenase E1 beta subunit, putative [Bodo saltans] diamond 243 166 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
668151 668151 PRJNA688736_P_NODE_48081_length_245_cov_0.906977_g47796_i0 PRJNA688736 48081 245 0.906977 2.22209365 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 172 1.63e-38   NTclustered gi|1002443636|ref|XM_015805198.1| 157538 g47796 i0 90.698 6.38367346938776 129 12 53 0 117 245 1949 1821 Leptomonas pyrrhocoris paraflagellar rod protein 2C mRNA blastn 1564 172 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
2452776 2452776 PRJNA688736_P_NODE_31162_length_287_cov_1.443925_g30877_i0 PRJNA688736 31162 287 1.443925 4.14406475 Vahlkampfia 5770 Heterolobosea other_Eukaryota 531 2.799999999999999e-146   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g30877 i0 100 78.9059233449477 287 0 100 0 1 287 698 412 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 22646 531 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
2453118 2453118 PRJNA688736_P_NODE_47062_length_246_cov_0.901734_g46777_i0 PRJNA688736 47062 246 0.901734 2.21826564 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 167 7.61e-37   NTclustered gi|731694902|ref|XM_010700160.1| 5679 g46777 i0 91.057 21.7439024390244 123 11 50 0 1 123 1124 1246 Leishmania panamensis ribosomal protein L3, putative partial mRNA blastn 5349 167 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania panamensis
3218857 3218857 PRJNA688736_P_NODE_40223_length_253_cov_0.866667_g39938_i0 PRJNA688736 40223 253 0.866667 2.19266751 Bodo saltans 75058 Euglenozoa other_Eukaryota 446 9.01e-121   NTclustered gi|206598103|gb|FJ168548.1| 75058 g39938 i0 98.419 130.616600790514 253 4 100 0 1 253 20680 20932 Bodo saltans clone fosmid 14L17, complete sequence blastn 33046 446 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
9596189 9596189 PRJNA688736_P_NODE_25928_length_312_cov_1.305439_g25643_i0 PRJNA688736 25928 312 1.305439 4.07296968 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 141 6.05e-29   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g25643 i0 87.2 12.599358974359 125 15 40 1 1 125 4268 4145 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3931 141 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
13422085 13422085 PRJNA688736_P_NODE_47591_length_245_cov_0.906977_g47306_i0 PRJNA688736 47591 245 0.906977 2.22209365 Tsukubamonas globosa 875863 Root_unresolved Root_unresolved 58.4 4.75e-4   NTclustered gi|590000475|ref|NC_023545.1| 875863 g47306 i0 92.5 0.755102040816326 40 3 16 0 111 150 2453 2492 Tsukubamonas globosa mitochondrial DNA, complete genome blastn 185 58.4 1 Eukaryota Discoba       Tsukubamonadida Tsukubamonadidae Tsukubamonas Tsukubamonas globosa
18520268 18520268 PRJNA688736_P_NODE_49635_length_243_cov_0.917647_g49350_i0 PRJNA688736 49635 243 0.917647 2.22988221 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 224 4.3899999999999996e-54   NTclustered gi|2119427415|ref|XM_044701330.1| 5763 g49350 i0 83.682 16.9588477366255 239 37 98 2 2 239 991 754 Naegleria fowleri uncharacterized protein (FDP41_010973), partial mRNA blastn 4121 224 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
19795011 19795011 PRJNA688736_P_NODE_44796_length_248_cov_0.891429_g44511_i0 PRJNA688736 44796 248 0.891429 2.21074392 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 315 2.59e-81   NTclustered gi|291002088|ref|XM_002683565.1| 5762 g44511 i0 91.026 0.943548387096774 234 20 94 1 5 238 1121 889 Naegleria gruberi seryl-tRNA synthetase (NAEGRDRAFT_77836), mRNA blastn 234 315 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19795105 19795105 PRJNA688736_P_NODE_49016_length_244_cov_0.912281_g48731_i0 PRJNA688736 49016 244 0.912281 2.22596564 Bodo saltans 75058 Euglenozoa other_Eukaryota 102 4.79e-24   NR CUI14589.1 75058 g48731 i0 56.8 0.995901639344262 81 35 99.6 0 244 2 209 289 CUI14589.1 UDP-glucose 6-dehydrogenase, putative, partial [Bodo saltans] diamond 243 102 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
21579598 21579598 PRJNA688736_P_NODE_25617_length_314_cov_1.153527_g25332_i0 PRJNA688736 25617 314 1.153527 3.62207478 Leishmania 5658 Euglenozoa other_Eukaryota 185 2.7799999999999993e-42   NTclustered gi|2593249075|emb|OY748415.1| 5660 g25332 i0 82.488 19.0350318471338 217 32 68 5 101 314 625286 625073 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 21 blastn 5977 185 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
26702234 26702234 PRJNA688736_P_NODE_49101_length_244_cov_0.883041_g48816_i0 PRJNA688736 49101 244 0.883041 2.15462004 Perkinsela sp. CCAP 156 1935466 Euglenozoa other_Eukaryota 58.5 1.02e-7   NR KNH08020.1 1314962 g48816 i0 46.8 4.81967213114754 79 42 97.1 0 237 1 205 283 KNH08020.1 U3-containing small subunit processome complex protein [Perkinsela sp. CCAP 1560/4] diamond 1176 58.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea   Ichthyobodonidae Perkinsela Perkinsela sp. CCAP 1560/4
26829236 26829236 PRJNA688736_P_NODE_38781_length_256_cov_1.622951_g38496_i0 PRJNA688736 38781 256 1.622951 4.15475456 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 110 9.14e-26   NR KAJ9443406.1 91374 g38496 i0 58 0.94921875 81 32 92.6 1 240 4 1739 1819 KAJ9443406.1 Pyruvate dehydrogenase [Diplonema papillatum] diamond 243 110 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
27050732 27050732 PRJNA688736_P_NODE_46702_length_246_cov_0.901734_g46417_i0 PRJNA688736 46702 246 0.901734 2.21826564 Bodo saltans 75058 Euglenozoa other_Eukaryota 71.2 3.4e-12   NR CUG87620.1 75058 g46417 i0 55.4 1.58536585365854 65 28 78 1 3 194 372 436 CUG87620.1 Hypothetical protein, putative [Bodo saltans] diamond 390 71.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
27335283 27335283 PRJNA688736_P_NODE_22523_length_332_cov_1.189189_g22238_i0 PRJNA688736 22523 332 1.189189 3.94810748 Euglena gracilis 3039 Euglenozoa other_Eukaryota 164 1.44e-49   NR QLA09585.1 3039 g22238 i0 73.4 0.984939759036145 109 29 98.5 0 329 3 19 127 QLA09585.1 40S small subunit ribosomal protein eS12 [Euglena gracilis] diamond 327 164 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
27398457 27398457 PRJNA688736_P_NODE_49243_length_243_cov_1.429412_g48958_i0 PRJNA688736 49243 243 1.429412 3.47347116 Acrasis kona 1008807 Heterolobosea other_Eukaryota 78.6 8.68e-15   NR KAL0484970.1 1008807 g48958 i0 43.6 0.962962962962963 78 41 96.3 2 2 235 229 303 KAL0484970.1 BRCA1-associated protein [Acrasis kona] diamond 234 78.6 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27903301 27903301 PRJNA688736_P_NODE_41525_length_251_cov_1.528090_g41240_i0 PRJNA688736 41525 251 1.52809 3.8355059 Bodo saltans 75058 Euglenozoa other_Eukaryota 105 2.27e-24   NR CUF00399.1 75058 g41240 i0 63.3 0.944223107569721 79 25 89.6 2 237 13 184 262 CUF00399.1 Hypothetical protein, putative [Bodo saltans] diamond 237 105 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
27935175 27935175 PRJNA688736_P_NODE_48405_length_244_cov_0.912281_g48120_i0 PRJNA688736 48405 244 0.912281 2.22596564 Euglena gracilis 3039 Euglenozoa other_Eukaryota 150 1e-44   NR QLA09569.1 3039 g48120 i0 84 0.995901639344262 81 13 99.6 0 244 2 42 122 QLA09569.1 40S small subunit ribosomal protein uS8 [Euglena gracilis] diamond 243 150 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
28187446 28187446 PRJNA688736_P_NODE_49906_length_243_cov_0.917647_g49621_i0 PRJNA688736 49906 243 0.917647 2.22988221 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 43.5 0.0199   NR KAJ9460799.1 91374 g49621 i0 31.3 0.987654320987654 80 55 98.8 0 242 3 607 686 KAJ9460799.1 hypothetical protein DIPPA_18231 [Diplonema papillatum] diamond 240 43.5 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
28629925 28629925 PRJNA688736_P_NODE_50467_length_242_cov_0.923077_g50182_i0 PRJNA688736 50467 242 0.923077 2.23384634 Bodo saltans 75058 Euglenozoa other_Eukaryota 149 1.22e-39   NR CUE72018.1 75058 g50182 i0 80 0.991735537190083 80 16 99.2 0 3 242 150 229 CUE72018.1 kinesin, putative [Bodo saltans] diamond 240 149 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28755994 28755994 PRJNA688736_P_NODE_36587_length_264_cov_3.366492_g36302_i0 PRJNA688736 36587 264 3.366492 8.88753888 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 71.2 1e-13   NR KAH8613585.1 5699 g36302 i0 56.5 4.42045454545455 69 29 77.3 1 240 37 1 69 KAH8613585.1 putative 60s Acidic ribosomal protein [Trypanosoma vivax] diamond 1167 71.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
28818851 28818851 PRJNA688736_P_NODE_48828_length_244_cov_0.912281_g48543_i0 PRJNA688736 48828 244 0.912281 2.22596564 Bodo saltans 75058 Euglenozoa other_Eukaryota 61.6 8.6e-9   NR CUE91622.1 75058 g48543 i0 84 0.995901639344262 81 13 99.6 0 243 1 865 945 CUE91622.1 Hypothetical protein, putative [Bodo saltans] diamond 243 61.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28882225 28882225 PRJNA688736_P_NODE_47628_length_245_cov_0.906977_g47343_i0 PRJNA688736 47628 245 0.906977 2.22209365 Bodo saltans 75058 Euglenozoa other_Eukaryota 150 2.93e-40   NR CUG93121.1 75058 g47343 i0 100 0.991836734693878 81 0 99.2 0 245 3 307 387 CUG93121.1 DNA-J chaperone, putative [Bodo saltans] diamond 243 150 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
29292729 29292729 PRJNA688736_P_NODE_48049_length_245_cov_0.906977_g47764_i0 PRJNA688736 48049 245 0.906977 2.22209365 Bodo saltans 75058 Euglenozoa other_Eukaryota 157 4.1699999999999996e-46   NR CUE99469.1 75058 g47764 i0 100 0.991836734693878 81 0 99.2 0 244 2 65 145 CUE99469.1 thioesterase-like protein, putative [Bodo saltans] diamond 243 157 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
29671296 29671296 PRJNA688736_P_NODE_41130_length_252_cov_0.871508_g40845_i0 PRJNA688736 41130 252 0.871508 2.19620016 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 76.6 4.83e-14   NR XP_002682656.1 5762 g40845 i0 44 2.78571428571429 84 47 100 0 252 1 119 202 XP_002682656.1 uncharacterized protein NAEGRDRAFT_29590 [Naegleria gruberi] diamond 702 76.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30367051 30367051 PRJNA688736_P_NODE_49932_length_243_cov_0.917647_g49647_i0 PRJNA688736 49932 243 0.917647 2.22988221 Euglena gracilis 3039 Euglenozoa other_Eukaryota 116 1.89e-29   NR QLA09583.1 3039 g49647 i0 75 0.938271604938272 76 19 93.8 0 234 7 1 76 QLA09583.1 40S small subunit ribosomal protein eS8 [Euglena gracilis] diamond 228 116 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
31251280 31251280 PRJNA688736_P_NODE_46155_length_247_cov_0.896552_g45870_i0 PRJNA688736 46155 247 0.896552 2.21448344 Bodo saltans 75058 Euglenozoa other_Eukaryota 110 4.06e-26   NR CUG89551.1 75058 g45870 i0 65.4 4.91902834008097 81 28 98.4 0 244 2 393 473 CUG89551.1 6-phosphogluconate dehydrogenase decarboxylating, putative [Bodo saltans] diamond 1215 110 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
32073810 32073810 PRJNA688736_P_NODE_42138_length_251_cov_0.876404_g41853_i0 PRJNA688736 42138 251 0.876404 2.19977404 Phytomonas sp. EM1 479712 Euglenozoa other_Eukaryota 72 1.94e-12   NR CCW61277.1 479712 g41853 i0 50 2.60557768924303 70 35 83.7 0 33 242 1 70 CCW61277.1 unnamed protein product [Phytomonas sp. EM1] diamond 654 72 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. EM1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;