RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA688736", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA688736 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1943321 1943321 PRJNA688736_P_NODE_13402_length_415_cov_1.783626_g13117_i0 PRJNA688736 13402 415 1.783626 7.4020479 Ripella decalvata 2047822 Discosea other_Eukaryota 643 5.179999999999999e-180   NTclustered gi|1269228434|gb|MF683559.1| 2047822 g13117 i0 94.774 101.067469879518 421 9 100 11 1 415 618 1031 Ripella decalvata clone 26.2.15 18S ribosomal RNA gene, partial sequence blastn 41943 643 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
22344882 22344882 PRJNA688736_P_NODE_22498_length_332_cov_1.204633_g22213_i0 PRJNA688736 22498 332 1.204633 3.99938156 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 470 7.289999999999999e-128   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g22213 i0 92.771 45.2530120481928 332 13 100 10 1 332 460 140 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 15024 470 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
24894307 24894307 PRJNA688736_P_NODE_46680_length_246_cov_0.901734_g46395_i0 PRJNA688736 46680 246 0.901734 2.21826564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 318 1.98e-82   NTclustered gi|300078498|gb|GU001160.1| 5755 g46395 i0 90 1.05691056910569 260 7 100 17 1 246 5662 5916 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 260 318 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27050731 27050731 PRJNA688736_P_NODE_41982_length_251_cov_0.876404_g41697_i0 PRJNA688736 41982 251 0.876404 2.19977404 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 147 1.3099999999999999e-42   NR XP_004348701.1 1257118 g41697 i0 88.6 0.944223107569721 79 9 94.4 0 239 3 1 79 XP_004348701.1 Ras family protein [Acanthamoeba castellanii str. Neff] diamond 237 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27303659 27303659 PRJNA688736_P_NODE_28843_length_298_cov_0.915556_g28558_i0 PRJNA688736 28843 298 0.915556 2.72835688 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 134 5.81e-38   NR 7SOG_A 5755 g28558 i0 62.2 0.986577181208054 98 37 98.7 0 3 296 3 100 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 294 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;