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contig_metadata

12 rows where bioproject = "PRJNA688736" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA688736 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1943321 1943321 PRJNA688736_P_NODE_13402_length_415_cov_1.783626_g13117_i0 PRJNA688736 13402 415 1.783626 7.4020479 Ripella decalvata 2047822 Discosea other_Eukaryota 643 5.179999999999999e-180   NTclustered gi|1269228434|gb|MF683559.1| 2047822 g13117 i0 94.774 101.067469879518 421 9 100 11 1 415 618 1031 Ripella decalvata clone 26.2.15 18S ribosomal RNA gene, partial sequence blastn 41943 643 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
3729659 3729659 PRJNA688736_P_NODE_47323_length_245_cov_1.360465_g47038_i0 PRJNA688736 47323 245 1.360465 3.33313925 Ceratiomyxa fruticulosa 435415 Evosea other_Eukaryota 132 8.289999999999998e-35   NR ABY84903.1 435415 g47038 i0 74.1 3.96734693877551 81 21 99.2 0 244 2 117 197 ABY84903.1 elongation factor 1A, partial [Ceratiomyxa fruticulosa] diamond 972 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Ceratiomyxaceae Ceratiomyxa Ceratiomyxa fruticulosa
4496039 4496039 PRJNA688736_P_NODE_42944_length_250_cov_0.881356_g42659_i0 PRJNA688736 42944 250 0.881356 2.20339 Raperostelium minutum 35219 Evosea other_Eukaryota 65.8 2.91e-6   NTclustered gi|156629701|gb|EF612188.1| 35219 g42659 i0 95.122 15.316 41 2 16 0 175 215 546 586 Raperostelium minutum strain 71-2 unknown (Dm0233813) gene, partial cds; adenylyl cyclase G (AcgA) gene, complete cds; and putative mitochondrial tryptophanyl-tRNA synthetase (MtrpS) gene, partial cds; nuclear genes for mitochondrial products blastn 3829 65.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Raperostelium Raperostelium minutum
14696900 14696900 PRJNA688736_P_NODE_40932_length_252_cov_0.871508_g40647_i0 PRJNA688736 40932 252 0.871508 2.19620016 Evosea 2605435 Evosea other_Eukaryota 119 2.899999999999999e-29   NR AOE43339.1 361085 g40647 i0 71.4 2 84 24 100 0 1 252 435 518 AOE43339.1 dihydrolipoamide acetyltransferase [Synstelium polycarpum] diamond 504 120 0.991666666666667 Eukaryota Amoebozoa   Evosea Eumycetozoa     Synstelium Synstelium polycarpum
22344882 22344882 PRJNA688736_P_NODE_22498_length_332_cov_1.204633_g22213_i0 PRJNA688736 22498 332 1.204633 3.99938156 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 470 7.289999999999999e-128   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g22213 i0 92.771 45.2530120481928 332 13 100 10 1 332 460 140 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 15024 470 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
24894307 24894307 PRJNA688736_P_NODE_46680_length_246_cov_0.901734_g46395_i0 PRJNA688736 46680 246 0.901734 2.21826564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 318 1.98e-82   NTclustered gi|300078498|gb|GU001160.1| 5755 g46395 i0 90 1.05691056910569 260 7 100 17 1 246 5662 5916 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 260 318 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26809099 26809099 PRJNA688736_P_NODE_51421_length_231_cov_2.670886_g51136_i0 PRJNA688736 51421 231 2.670886 6.16974666 Eumycetozoa 142796 Evosea other_Eukaryota 67.4 1.48e-11   NR XP_012759525.1 1410327 g51136 i0 63 3.75324675324675 46 17 59.7 0 215 78 118 163 XP_012759525.1 hypothetical protein SAMD00019534_006380, partial [Acytostelium subglobosum LB1] diamond 867 67.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
27050731 27050731 PRJNA688736_P_NODE_41982_length_251_cov_0.876404_g41697_i0 PRJNA688736 41982 251 0.876404 2.19977404 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 147 1.3099999999999999e-42   NR XP_004348701.1 1257118 g41697 i0 88.6 0.944223107569721 79 9 94.4 0 239 3 1 79 XP_004348701.1 Ras family protein [Acanthamoeba castellanii str. Neff] diamond 237 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27303659 27303659 PRJNA688736_P_NODE_28843_length_298_cov_0.915556_g28558_i0 PRJNA688736 28843 298 0.915556 2.72835688 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 134 5.81e-38   NR 7SOG_A 5755 g28558 i0 62.2 0.986577181208054 98 37 98.7 0 3 296 3 100 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 294 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28882223 28882223 PRJNA688736_P_NODE_39868_length_253_cov_0.866667_g39583_i0 PRJNA688736 39868 253 0.866667 2.19266751 Polysphondylium violaceum 133409 Evosea other_Eukaryota 89.7 1.07e-18   NR KAF2074889.1 133409 g39583 i0 60.5 0.901185770750988 76 28 87.7 1 253 32 404 479 KAF2074889.1 hypothetical protein CYY_003808 [Polysphondylium violaceum] diamond 228 89.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
29304259 29304259 PRJNA688736_P_NODE_45149_length_248_cov_0.891429_g44864_i0 PRJNA688736 45149 248 0.891429 2.21074392 root 1 Root_unresolved Root_unresolved 127 2.88e-33   NR KAF2075816.1 133409 g44864 i0 71.3 26.5161290322581 80 23 96.8 0 3 242 245 324 KAF2075816.1 hypothetical protein CYY_002899 [Polysphondylium violaceum] diamond 6576 128 0.9921875 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30461860 30461860 PRJNA688736_P_NODE_44173_length_249_cov_0.886364_g43888_i0 PRJNA688736 44173 249 0.886364 2.20704636 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 49.7 1.4e-4   NR KAH3756930.1 1580589 g43888 i0 38.6 0.686746987951807 57 33 66.3 1 185 21 19 75 KAH3756930.1 hypothetical protein Pelo_11239 [Pelomyxa schiedti] diamond 171 49.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;