RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA688655" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688655 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27726016 27726016 PRJNA688655_P_NODE_8084_length_251_cov_0.865169_g8019_i0 PRJNA688655 8084 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 96.7 4.47e-21   NR KAF7683272.1 164912 g8019 i0 54.4 9.53784860557769 79 36 94.4 0 240 4 132 210 KAF7683272.1 DNA topoisomerase 2 [Astathelohania contejeani] diamond 2394 97.1 0.995880535530381 Eukaryota Opisthokonta Fungi Microsporidia     Astathelohaniidae Astathelohania Astathelohania contejeani
31282883 31282883 PRJNA688655_P_NODE_9695_length_249_cov_0.875000_g9630_i0 PRJNA688655 9695 249 0.875 2.17875 Nematocida sp. AWRm77 2670344 Fungi Fungi 130 6.790000000000001e-33   NR KAI5190757.1 2670344 g9630 i0 76.8 0.987951807228916 82 19 98.8 0 247 2 45 126 KAI5190757.1 nuclear export mediator factor NEMF [Nematocida sp. AWRm77] diamond 246 130 1 Eukaryota Opisthokonta Fungi Microsporidia       Nematocida Nematocida sp. AWRm77

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;