RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688655", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA688655 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27378529 27378529 PRJNA688655_P_NODE_10063_length_248_cov_0.891429_g9998_i0 PRJNA688655 10063 248 0.891429 2.21074392 root 1 Root_unresolved Root_unresolved 42.7 0.0392   NR KAH7709764.1 70226 g9998 i0 38.6 1.42741935483871 57 34 67.7 1 12 179 353 409 KAH7709764.1 Protein KIN-9 c [Aphelenchoides avenae] diamond 354 43.1 0.990719257540603 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
29682873 29682873 PRJNA688655_P_NODE_16570_length_241_cov_0.916667_g16505_i0 PRJNA688655 16570 241 0.916667 2.20916747 Metazoa 33208 Nematoda Nematoda 50.1 1.65e-5   NR EYC04280.1 53326 g16505 i0 42.9 4.7551867219917 56 32 69.7 0 2 169 40 95 EYC04280.1 hypothetical protein Y032_0089g2326 [Ancylostoma ceylanicum] diamond 1146 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;