RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688655", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA688655 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5770727 5770727 PRJNA688655_P_NODE_13125_length_245_cov_0.895349_g13060_i0 PRJNA688655 13125 245 0.895349 2.19360505 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.022   NTclustered gi|2912992646|dbj|AP039597.1| 145626 g13060 i0 100 0.114285714285714 28 0 11 0 120 147 23969276 23969249 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 16, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
19794120 19794120 PRJNA688655_P_NODE_4376_length_308_cov_1.748936_g4311_i0 PRJNA688655 4376 308 1.748936 5.38672288 Ruditapes philippinarum 129788 Mollusca Mollusca 52.8 0.029   NTclustered gi|2616529205|ref|XM_060707314.1| 129788 g4311 i0 100 1.27272727272727 28 0 9 0 260 287 929 956 PREDICTED: Ruditapes philippinarum SPARC-related modular calcium-binding protein 1-like (LOC132722762), transcript variant X7, mRNA blastn 392 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Ruditapes Ruditapes philippinarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;