RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA688655", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA688655 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1176899 1176899 PRJNA688655_P_NODE_14461_length_243_cov_0.905882_g14396_i0 PRJNA688655 14461 243 0.905882 2.20129326 Malassezia 55193 Fungi Fungi 442 1.1099999999999995e-119   NTclustered gi|915512619|gb|KP825402.1| 76775 g14396 i0 99.587 98.3497942386831 242 1 99 0 2 243 262 21 Malassezia restricta strain ISOSEB46F 28S ribosomal RNA gene, partial sequence blastn 23899 442 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
5005307 5005307 PRJNA688655_P_NODE_4344_length_309_cov_1.305085_g4279_i0 PRJNA688655 4344 309 1.305085 4.03271265 Malassezia 55193 Fungi Fungi 571 1.7899999999999995e-158   NTclustered gi|1321659621|gb|KY911094.1| 76775 g4279 i0 100 88.1941747572816 309 0 100 0 1 309 810 502 Malassezia restricta mitochondrion, complete genome blastn 27252 571 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
5770760 5770760 PRJNA688655_P_NODE_15765_length_242_cov_0.911243_g15700_i0 PRJNA688655 15765 242 0.911243 2.20520806 Malassezia restricta 76775 Fungi Fungi 436 5.1499999999999985e-118   NTclustered gi|1546634038|ref|XM_027628679.1| 76775 g15700 i0 99.174 1 242 2 100 0 1 242 634 393 Malassezia restricta uncharacterized protein (MRET_2052), partial mRNA blastn 242 436 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
10871274 10871274 PRJNA688655_P_NODE_669_length_646_cov_1.499127_g605_i0 PRJNA688655 669 646 1.499127 9.68436042 Fungi 4751 Fungi Fungi 60.1 1.05e-7   NR KAG0659116.1 5537 g605 i0 43.4 1.15170278637771 83 45 38.5 1 332 84 2 82 KAG0659116.1 Non-histone chromosomal protein 6 [Rhodotorula mucilaginosa] diamond 744 60.5 0.993388429752066 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula mucilaginosa
26797434 26797434 PRJNA688655_P_NODE_9101_length_250_cov_0.870056_g9036_i0 PRJNA688655 9101 250 0.870056 2.17514 Cristinia sonorae 1940300 Fungi Fungi 42.7 0.0365   NR KAH8106883.1 1940300 g9036 i0 37.3 0.804 67 31 68.4 2 78 248 146 211 KAH8106883.1 DUF887-domain-containing protein [Cristinia sonorae] diamond 201 42.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Stephanosporaceae Cristinia Cristinia sonorae
30113770 30113770 PRJNA688655_P_NODE_8452_length_250_cov_0.870056_g8387_i0 PRJNA688655 8452 250 0.870056 2.17514 Suillus hirtellus 279518 Fungi Fungi 41.2 0.0245   NR KAG2052235.1 279518 g8387 i0 32.3 0.744 62 42 74.4 0 234 49 15 76 KAG2052235.1 hypothetical protein BDR06DRAFT_854865, partial [Suillus hirtellus] diamond 186 41.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus hirtellus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;