RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688655", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA688655 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3728777 3728777 PRJNA688655_P_NODE_8943_length_250_cov_0.870056_g8878_i0 PRJNA688655 8943 250 0.870056 2.17514 Rhodothermales 1853224 Bacteria Bacteria 147 1.01e-30   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g8878 i0 84.211 42.776 152 22 60 2 87 237 3407815 3407665 Rhodothermaceae bacterium RA chromosome, complete genome blastn 10694 147 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
21579106 21579106 PRJNA688655_P_NODE_16197_length_241_cov_0.916667_g16132_i0 PRJNA688655 16197 241 0.916667 2.20916747 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 147 7e-41   NR HEX9951031.1 2838334 g16132 i0 85 0.995850622406639 80 12 99.6 0 240 1 49 128 HEX9951031.1 zinc-dependent alcohol dehydrogenase [Rubricoccaceae bacterium] diamond 240 147 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
29904352 29904352 PRJNA688655_P_NODE_13151_length_245_cov_0.895349_g13086_i0 PRJNA688655 13151 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 149 1.0399999999999997e-42   NR WP_311661267.1 1434037 g13086 i0 96.3 1.98367346938776 81 3 99.2 0 2 244 111 191 WP_311661267.1 MULTISPECIES: RNA polymerase sigma factor RpoD/SigA [Rubrivirga] diamond 486 150 0.993333333333333 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;