RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA688655", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA688655 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27935168 27935168 PRJNA688655_P_NODE_9705_length_249_cov_0.875000_g9640_i0 PRJNA688655 9705 249 0.875 2.17875 Fibrobacter sp. 35828 Bacteria Bacteria 42.7 0.0295   NR MBR2306013.1 35828 g9640 i0 48.6 0.44578313253012 37 19 44.6 0 26 136 157 193 MBR2306013.1 hypothetical protein [Fibrobacter sp.] diamond 111 42.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30303896 30303896 PRJNA688655_P_NODE_15332_length_242_cov_0.911243_g15267_i0 PRJNA688655 15332 242 0.911243 2.20520806 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 138 7.14e-36   NR MDD5672633.1 2663014 g15267 i0 82.5 0.991735537190083 80 14 99.2 0 242 3 407 486 MDD5672633.1 DEAD/DEAH box helicase family protein [Chitinivibrionales bacterium] diamond 240 138 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
31314591 31314591 PRJNA688655_P_NODE_16615_length_241_cov_0.916667_g16550_i0 PRJNA688655 16615 241 0.916667 2.20916747 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 109 2.82e-27   NR MBN1982189.1 2663014 g16550 i0 58.8 2.98755186721992 80 33 99.6 0 240 1 148 227 MBN1982189.1 MBL fold metallo-hydrolase [Chitinivibrionales bacterium] diamond 720 109 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
32548649 32548649 PRJNA688655_P_NODE_15739_length_242_cov_0.911243_g15674_i0 PRJNA688655 15739 242 0.911243 2.20520806 Chitinivibrionia bacterium 2660710 Bacteria Bacteria 146 9.23e-40   NR MBI4720265.1 2660710 g15674 i0 85 0.991735537190083 80 12 99.2 0 242 3 61 140 MBI4720265.1 PD40 domain-containing protein [Chitinivibrionia bacterium] diamond 240 146 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia       Chitinivibrionia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;