RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA688655", tax_clade = "Caldisericota/Cryosericota group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Caldisericota/Cryosericota group · 4 ✖

bioproject 1

  • PRJNA688655 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27714473 27714473 PRJNA688655_P_NODE_14764_length_243_cov_0.905882_g14699_i0 PRJNA688655 14764 243 0.905882 2.20129326 Caldisericia bacterium 2758719 Bacteria Bacteria 95.5 3.2500000000000003e-21   NR HOL83650.1 2758719 g14699 i0 70 0.987654320987654 80 14 98.8 1 2 241 68 137 HOL83650.1 hypothetical protein [Caldisericia bacterium] diamond 240 95.5 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium
28724466 28724466 PRJNA688655_P_NODE_10987_length_247_cov_0.885057_g10922_i0 PRJNA688655 10987 247 0.885057 2.18609079 Caldisericota bacterium 2052147 Bacteria Bacteria 77.8 6.8e-16   NR NTU61455.1 2052147 g10922 i0 44.3 0.959514170040486 79 44 96 0 2 238 23 101 NTU61455.1 hypothetical protein [Caldisericota bacterium] diamond 237 77.8 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota         Caldisericota bacterium
29829465 29829465 PRJNA688655_P_NODE_14651_length_243_cov_0.905882_g14586_i0 PRJNA688655 14651 243 0.905882 2.20129326 Caldisericales bacterium 2614251 Bacteria Bacteria 49.7 1.4e-4   NR NLI39724.1 2614251 g14586 i0 34.2 1.82716049382716 73 48 90.1 0 25 243 96 168 NLI39724.1 PQQ-binding-like beta-propeller repeat protein [Caldisericales bacterium] diamond 444 49.7 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales     Caldisericales bacterium
29955897 29955897 PRJNA688655_P_NODE_9531_length_249_cov_0.875000_g9466_i0 PRJNA688655 9531 249 0.875 2.17875 Caldisericia bacterium 2758719 Bacteria Bacteria 154 3.28e-41   NR MBP7139975.1 2758719 g9466 i0 92.7 0.987951807228916 82 6 98.8 0 247 2 572 653 MBP7139975.1 hypothetical protein [Caldisericia bacterium] diamond 246 154 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;