RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA688655" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA688655 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18519154 18519154 PRJNA688655_P_NODE_1055_length_521_cov_34.607143_g990_i0 PRJNA688655 1055 521 34.607143 180.30321503 Microglomus paxillus 2977203 Evosea other_Eukaryota 462 1.99e-125   NTclustered gi|2295860781|gb|OP392029.1| 2977203 g990 i0 87.469 29.6065259117083 407 43 77 7 120 521 1762 1359 Microglomus paxillus isolate K-2016-24-1C-4 small subunit ribosomal RNA gene, partial sequence blastn 15425 462 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Microglomus Microglomus paxillus
18519178 18519178 PRJNA688655_P_NODE_13175_length_245_cov_0.895349_g13110_i0 PRJNA688655 13175 245 0.895349 2.19360505 Dictyostelium discoideum 44689 Evosea other_Eukaryota 114 1.5600000000000002e-27   NR AAB70186.1 44689 g13110 i0 67.1 2.90204081632653 79 26 96.7 0 241 5 474 552 AAB70186.1 RedA, partial [Dictyostelium discoideum] diamond 711 114 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
19794070 19794070 PRJNA688655_P_NODE_156_length_1246_cov_51.122762_g128_i0 PRJNA688655 156 1246 51.122762 636.98961452 Microglomus paxillus 2977203 Evosea other_Eukaryota 1496 0   NTclustered gi|2295860781|gb|OP392029.1| 2977203 g128 i0 88.596 29.2343499197432 1254 114 100 25 1 1246 14 1246 Microglomus paxillus isolate K-2016-24-1C-4 small subunit ribosomal RNA gene, partial sequence blastn 36426 1496 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Microglomus Microglomus paxillus
19794137 19794137 PRJNA688655_P_NODE_56_length_1756_cov_52.345217_g39_i0 PRJNA688655 56 1756 52.345217 919.18201052 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 254 4.62e-62   NTclustered gi|19911164|dbj|AB066364.1| 108607 g39 i0 76.226 32.5222095671982 530 97 29 26 975 1488 1175 1691 Mastigamoeba balamuthi gene for LSU rRNA, partial sequence, clone:MbR2 blastn 57109 254 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
22344518 22344518 PRJNA688655_P_NODE_3238_length_338_cov_1.875472_g3173_i0 PRJNA688655 3238 338 1.875472 6.33909536 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 154 1.47e-45   NR XP_004341446.1 1257118 g3173 i0 83.5 1.6508875739645 91 15 80.8 0 326 54 61 151 XP_004341446.1 core histone h2a/h2b/h3/h4 superfamily protein [Acanthamoeba castellanii str. Neff] diamond 558 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22344567 22344567 PRJNA688655_P_NODE_7118_length_259_cov_1.236559_g7053_i0 PRJNA688655 7118 259 1.236559 3.20268781 Heterostelium album 2086695 Evosea other_Eukaryota 152 2.26e-32   NTclustered gi|1160566576|ref|XM_020580913.1| 670386 g7053 i0 79.452 19.8223938223938 219 42 84 3 34 250 8 225 Polysphondylium pallidum PN500 cyclophilin-type peptidylprolyl cis-trans isomerase (ppiA), partial mRNA blastn 5134 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
26924113 26924113 PRJNA688655_P_NODE_15462_length_242_cov_0.911243_g15397_i0 PRJNA688655 15462 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 1.61e-26   NR XP_004339235.1 1257118 g15397 i0 67.1 0.942148760330578 76 25 94.2 0 241 14 462 537 XP_004339235.1 Signal transducer and activator of transcription STAT family protein [Acanthamoeba castellanii str. Neff] diamond 228 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27524604 27524604 PRJNA688655_P_NODE_1423_length_458_cov_2.223377_g1358_i0 PRJNA688655 1423 458 2.223377 10.18306666 Cavenderia fasciculata 261658 Evosea other_Eukaryota 68.2 3.98e-10   NR XP_004363200.1 261658 g1358 i0 43.3 0.589519650655022 90 50 58.3 1 149 415 175 264 XP_004363200.1 SAP DNA-binding domain-containing protein [Cavenderia fasciculata] diamond 270 68.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27745872 27745872 PRJNA688655_P_NODE_15684_length_242_cov_0.911243_g15619_i0 PRJNA688655 15684 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 134 1.39e-35   NR XP_004356673.1 1257118 g15619 i0 76.9 0.966942148760331 78 17 96.7 1 240 7 38 114 XP_004356673.1 actinrelated protein 2 isoform 4, putative [Acanthamoeba castellanii str. Neff] diamond 234 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28282162 28282162 PRJNA688655_P_NODE_1646_length_431_cov_1.290503_g1581_i0 PRJNA688655 1646 431 1.290503 5.56206793 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 105 3.62e-23   NR PRP74666.1 1890364 g1581 i0 39.6 1.93503480278422 139 80 96.8 2 6 422 1296 1430 PRP74666.1 hypothetical protein PROFUN_03588 [Planoprotostelium fungivorum] diamond 834 105 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29461854 29461854 PRJNA688655_P_NODE_10210_length_248_cov_0.880000_g10145_i0 PRJNA688655 10210 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.1 5.2400000000000005e-10   NR XP_012759537.1 1410327 g10145 i0 42.9 4.93548387096774 84 46 99.2 1 248 3 135 218 XP_012759537.1 hypothetical protein SAMD00019534_006500 [Acytostelium subglobosum LB1] diamond 1224 65.5 0.993893129770992 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
32295636 32295636 PRJNA688655_P_NODE_7559_length_252_cov_1.474860_g7494_i0 PRJNA688655 7559 252 1.47486 3.7166472 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.5 7.35e-12   NR XP_004356787.1 1257118 g7494 i0 49.4 0.94047619047619 79 37 94 2 1 237 871 946 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 237 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;