RNAquarium Metadata Server
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contig_metadata

17 rows where bioproject = "PRJNA688414" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 17 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688414 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15969741 15969741 PRJNA688414_P_NODE_7393_length_246_cov_0.901734_g7359_i0 PRJNA688414 7393 246 0.901734 2.21826564 Pendulispora brunnea 2905690 Bacteria Bacteria 165 2.74e-36   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g7359 i0 79.661 3.76829268292683 236 43 95 4 14 246 10383962 10383729 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 927 165 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
26639042 26639042 PRJNA688414_P_NODE_7681_length_245_cov_0.906977_g7647_i0 PRJNA688414 7681 245 0.906977 2.22209365 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 144 7.65e-40   NR TMA31923.1 2026735 g7647 i0 85.2 1.98367346938776 81 12 99.2 0 2 244 234 314 TMA31923.1 MAG: long-chain fatty acid--CoA ligase, partial [Deltaproteobacteria bacterium] diamond 486 144 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27082247 27082247 PRJNA688414_P_NODE_7962_length_244_cov_0.883041_g7928_i0 PRJNA688414 7962 244 0.883041 2.15462004 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 168 2.36e-51   NR TMA65010.1 2026735 g7928 i0 100 0.995901639344262 81 0 99.6 0 1 243 63 143 TMA65010.1 MAG: sulfopyruvate decarboxylase [Deltaproteobacteria bacterium] diamond 243 168 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27840136 27840136 PRJNA688414_P_NODE_7684_length_245_cov_0.906977_g7650_i0 PRJNA688414 7684 245 0.906977 2.22209365 Kofleriaceae bacterium 2212474 Bacteria Bacteria 135 9.319999999999999e-35   NR HEY5950321.1 2212474 g7650 i0 77.8 0.991836734693878 81 18 99.2 0 2 244 411 491 HEY5950321.1 CehA/McbA family metallohydrolase [Kofleriaceae bacterium] diamond 243 135 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28092915 28092915 PRJNA688414_P_NODE_7165_length_247_cov_0.896552_g7131_i0 PRJNA688414 7165 247 0.896552 2.21448344 Hyalangium sp. 2028555 Bacteria Bacteria 138 1.12e-35   NR WP_324992885.1 2028555 g7131 i0 88.9 0.983805668016194 81 9 98.4 0 247 5 1323 1403 WP_324992885.1 trifunctional serine/threonine-protein kinase/ATP-binding protein/sensor histidine kinase [Hyalangium sp.] diamond 243 138 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
28882196 28882196 PRJNA688414_P_NODE_6128_length_252_cov_0.871508_g6094_i0 PRJNA688414 6128 252 0.871508 2.19620016 Myxococcaceae bacterium 2484252 Bacteria Bacteria 157 1.59e-42   NR HYV47096.1 2484252 g6094 i0 97.6 2 84 2 100 0 1 252 380 463 HYV47096.1 error-prone DNA polymerase [Myxococcaceae bacterium] diamond 504 157 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29260980 29260980 PRJNA688414_P_NODE_6369_length_251_cov_0.876404_g6335_i0 PRJNA688414 6369 251 0.876404 2.19977404 Polyangia bacterium 3058050 Bacteria Bacteria 96.7 1.3100000000000002e-21   NR HXU84038.1 3058050 g6335 i0 63.9 0.99203187250996006 83 30 99.2 0 1 249 63 145 HXU84038.1 hypothetical protein [Polyangia bacterium] diamond 249 96.7 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
29355996 29355996 PRJNA688414_P_NODE_8349_length_242_cov_0.923077_g8315_i0 PRJNA688414 8349 242 0.923077 2.23384634 Labilithrix sp. 1971228 Bacteria Bacteria 90.5 5.58e-19   NR MBX3197200.1 1971228 g8315 i0 68.8 2.98760330578512 64 20 79.3 0 223 32 138 201 MBX3197200.1 hypothetical protein [Labilithrix sp.] diamond 723 90.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
29829458 29829458 PRJNA688414_P_NODE_8351_length_242_cov_0.923077_g8317_i0 PRJNA688414 8351 242 0.923077 2.23384634 Polyangiaceae bacterium 2268199 Bacteria Bacteria 123 6.69e-31   NR HVJ22268.1 2268199 g8317 i0 83.1 0.954545454545455 77 13 95.5 0 242 12 98 174 HVJ22268.1 YifB family Mg chelatase-like AAA ATPase [Polyangiaceae bacterium] diamond 231 123 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30208338 30208338 PRJNA688414_P_NODE_6332_length_251_cov_0.876404_g6298_i0 PRJNA688414 6332 251 0.876404 2.19977404 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.5 1.33e-6   NR TMB49044.1 2026735 g6298 i0 70.6 1.13545816733068 34 10 40.6 0 6 107 392 425 TMB49044.1 MAG: hypothetical protein E6J60_13550 [Deltaproteobacteria bacterium] diamond 285 55.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30335417 30335417 PRJNA688414_P_NODE_7912_length_244_cov_0.912281_g7878_i0 PRJNA688414 7912 244 0.912281 2.22596564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 134 1.11e-35   NR MBI3756824.1 2026735 g7878 i0 86.3 2.95081967213115 80 11 98.4 0 242 3 335 414 MBI3756824.1 AAA family ATPase [Deltaproteobacteria bacterium] diamond 720 134 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30587619 30587619 PRJNA688414_P_NODE_6693_length_250_cov_0.881356_g6659_i0 PRJNA688414 6693 250 0.881356 2.20339 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 51.6 2.46e-5   NR MBM4254261.1 2026735 g6659 i0 44.4 0.756 63 34 75.6 1 194 6 130 191 MBM4254261.1 PEP-CTERM sorting domain-containing protein [Deltaproteobacteria bacterium] diamond 189 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30788922 30788922 PRJNA688414_P_NODE_6914_length_249_cov_0.886364_g6880_i0 PRJNA688414 6914 249 0.886364 2.20704636 Bacteria 2 Bacteria Bacteria 51.2 3.91e-5   NR WP_044247881.1 51 g6880 i0 35.4 2.90361445783133 79 51 95.2 0 12 248 126 204 WP_044247881.1 DUF1444 family protein [Chondromyces apiculatus] diamond 723 51.6 0.992248062015504 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces apiculatus
30967057 30967057 PRJNA688414_P_NODE_6474_length_251_cov_0.876404_g6440_i0 PRJNA688414 6474 251 0.876404 2.19977404 Kofleriaceae bacterium 2212474 Bacteria Bacteria 87.8 5.66e-18   NR MCB9563607.1 2212474 g6440 i0 67.1 0.9800796812749 82 23 98 2 3 248 8 85 MCB9563607.1 HAMP domain-containing histidine kinase [Kofleriaceae bacterium] diamond 246 87.8 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31757381 31757381 PRJNA688414_P_NODE_7057_length_248_cov_0.891429_g7023_i0 PRJNA688414 7057 248 0.891429 2.21074392 Kofleriaceae bacterium 2212474 Bacteria Bacteria 112 4.05e-27   NR HEY0478142.1 2212474 g7023 i0 67.6 0.895161290322581 74 24 89.5 0 25 246 1 74 HEY0478142.1 ATP-binding protein [Kofleriaceae bacterium] diamond 222 112 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32453730 32453730 PRJNA688414_P_NODE_6859_length_249_cov_0.886364_g6825_i0 PRJNA688414 6859 249 0.886364 2.20704636 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.00941   NR MDX2019878.1 2026735 g6825 i0 74.1 0.650602409638554 27 7 32.5 0 2 82 146 172 MDX2019878.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 162 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32548637 32548637 PRJNA688414_P_NODE_6659_length_250_cov_0.881356_g6625_i0 PRJNA688414 6659 250 0.881356 2.20339 Polyangium mundeleinium 2995306 Bacteria Bacteria 56.6 5.38e-7   NR WP_271916737.1 2995306 g6625 i0 41.6 0.924 77 43 92.4 2 249 19 728 802 WP_271916737.1 hypothetical protein [Polyangium mundeleinium] diamond 231 56.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium mundeleinium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;