RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688414" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688414 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4494958 4494958 PRJNA688414_P_NODE_6124_length_252_cov_0.871508_g6090_i0 PRJNA688414 6124 252 0.871508 2.19620016 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 278 3.46e-70   NTclustered gi|2874254107|emb|OY970192.1| 412054 g6090 i0 88.596 42.4047619047619 228 26 90 0 11 238 4292412 4292639 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 10686 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14695969 14695969 PRJNA688414_P_NODE_7172_length_247_cov_0.896552_g7138_i0 PRJNA688414 7172 247 0.896552 2.21448344 Bacteria 2 Bacteria Bacteria 131 1.9e-34   NR HJU74115.1 2026741 g7138 i0 90.1 2.58704453441296 71 7 86.2 0 2 214 349 419 HJU74115.1 amidohydrolase family protein [Gemmatimonadaceae bacterium] diamond 639 132 0.992424242424242 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30113748 30113748 PRJNA688414_P_NODE_7092_length_248_cov_0.891429_g7058_i0 PRJNA688414 7092 248 0.891429 2.21074392 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 133 2.33e-34   NR HEY8259192.1 2448054 g7058 i0 82.9 3.96774193548387 82 14 99.2 0 1 246 497 578 HEY8259192.1 ABC transporter ATP-binding protein [Gemmatimonadales bacterium] diamond 984 133 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;