RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688414" and tax_phylum = "Candidatus Methylomirabilota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methylomirabilota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA688414 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10871108 10871108 PRJNA688414_P_NODE_8389_length_242_cov_0.857988_g8355_i0 PRJNA688414 8389 242 0.857988 2.07633096 root 1 Root_unresolved Root_unresolved 144 6.9e-40   NR HMB87735.1 2072417 g8355 i0 90 7.93388429752066 80 8 99.2 0 241 2 115 194 HMB87735.1 sigma-54 dependent transcriptional regulator [Candidatus Methylomirabilota bacterium] diamond 1920 145 0.993103448275862 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
29924392 29924392 PRJNA688414_P_NODE_8171_length_243_cov_0.917647_g8137_i0 PRJNA688414 8171 243 0.917647 2.22988221 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 152 2.16e-43   NR HEX2501668.1 2072417 g8137 i0 93.5 0.950617283950617 77 5 95.1 0 11 241 1 77 HEX2501668.1 hypothetical protein [Candidatus Methylomirabilota bacterium] diamond 231 152 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;