RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688352" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688352 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2452074 2452074 PRJNA688352_P_NODE_8222_length_249_cov_0.875000_g8119_i0 PRJNA688352 8222 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 62.1 3.74e-5   NTclustered gi|194310671|gb|CP001108.1| 290512 g8119 i0 92.857 4.80722891566265 42 3 18 0 4 45 1933565 1933524 Prosthecochloris aestuarii DSM 271 chromosome, complete genome blastn 1197 62.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii
32232231 32232231 PRJNA688352_P_NODE_7758_length_250_cov_0.870056_g7655_i0 PRJNA688352 7758 250 0.870056 2.17514 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 95.9 8.33e-21   NR MBA4313383.1 2067991 g7655 i0 53 0.996 83 39 99.6 0 1 249 469 551 MBA4313383.1 hypothetical protein [Chlorobiaceae bacterium] diamond 249 95.9 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;