RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688352", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA688352 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4494776 4494776 PRJNA688352_P_NODE_11824_length_242_cov_0.911243_g11721_i0 PRJNA688352 11824 242 0.911243 2.20520806 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 151 1.7299999999999999e-40   NR MFI0435850.1 2052176 g11721 i0 84.8 0.979338842975207 79 12 97.9 0 237 1 131 209 MFI0435850.1 1,4-alpha-glucan branching protein GlgB [Parachlamydiaceae bacterium] diamond 237 151 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27493089 27493089 PRJNA688352_P_NODE_7723_length_250_cov_0.870056_g7620_i0 PRJNA688352 7723 250 0.870056 2.17514 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 105 2.5399999999999998e-24   NR MEI8365930.1 2052176 g7620 i0 55.4 1.968 83 37 99.6 0 250 2 553 635 MEI8365930.1 insulinase family protein [Parachlamydiaceae bacterium] diamond 492 105 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29450369 29450369 PRJNA688352_P_NODE_7610_length_250_cov_0.870056_g7507_i0 PRJNA688352 7610 250 0.870056 2.17514 Parachlamydiales bacterium 2052178 Bacteria Bacteria 60.5 1.46e-8   NR MFA6915080.1 2052178 g7507 i0 37 0.972 81 32 75.6 2 60 248 59 138 MFA6915080.1 hypothetical protein [Parachlamydiales bacterium] diamond 243 60.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;