RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA688352", tax_clade = "PVC group" and tax_phylum = "Candidatus Auribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Auribacterota · 1 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA688352 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31156147 31156147 PRJNA688352_P_NODE_10175_length_245_cov_0.895349_g10072_i0 PRJNA688352 10175 245 0.895349 2.19360505 Candidatus Erginobacter occultus 3039688 Bacteria Bacteria 91.7 4.600000000000001e-22   NR MDP8235503.1 3039688 g10072 i0 76.7 0.73469387755102 60 14 73.5 0 66 245 1 60 MDP8235503.1 Trp family transcriptional regulator [Candidatus Erginobacter occultus] diamond 180 91.7 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Erginobacteria Candidatus Erginobacterales Candidatus Erginobacteraceae Candidatus Erginobacter Candidatus Erginobacter occultus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;